Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1780

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
2,014,059	+		Rv1779c	0.77	-0.5
2,014,059	+		Rv1779c	0.77	-1.3
2,014,060	-		Rv1779c	0.77	-0.6
2,014,060	-		Rv1779c	0.77	-0.2
2,014,419	+				-0.1
2,014,419	+				-0.5
2,014,420	-				+1.7
2,014,420	-				-0.1
2,014,420	-				-0.8
2,014,464	-				-0.2
2,014,690	+				-1.1
2,014,691	-				+0.5
2,014,691	-				-0.3
2,014,692	+				-0.2
2,014,692	+				+0.2
2,014,692	+				+0.5
2,014,692	+				-0.3
2,014,693	-				-3.8
2,014,693	-				+0.3
2,014,698	+				+2.5
2,014,698	+				-0.9
2,014,698	+				-1.2
2,014,698	+				-0.6
2,014,699	-				-1.3
2,014,720	-				+0.5
2,014,762	-		Rv1780	0.11	-1.1
2,014,762	-		Rv1780	0.11	-1.3
2,015,039	+		Rv1780	0.60	-2.1
2,015,040	-		Rv1780	0.60	-1.8
2,015,074	+		Rv1780	0.66	-1.3
2,015,170	+		Rv1780	0.84	-0.6
2,015,170	+		Rv1780	0.84	+0.5
2,015,171	-		Rv1780	0.84	+0.3
2,015,244	+				+0.2
2,015,245	-				+0.0
2,015,535	-		Rv1781c	0.11	-0.4
2,015,535	-		Rv1781c	0.11	-0.8
2,015,540	+		Rv1781c	0.11	-0.7
2,015,672	-		Rv1781c	0.17	+0.3
2,015,699	-		Rv1781c	0.18	-0.0
2,015,699	-		Rv1781c	0.18	-1.1
2,015,718	-		Rv1781c	0.19	+0.2
2,015,718	-		Rv1781c	0.19	-1.1
2,015,863	+		Rv1781c	0.26	-0.8
2,015,864	-		Rv1781c	0.26	+0.1
2,015,864	-		Rv1781c	0.26	-0.3
2,015,866	+		Rv1781c	0.26	-0.9
2,015,866	+		Rv1781c	0.26	-0.2
2,015,870	+		Rv1781c	0.26	+0.1
2,015,870	+		Rv1781c	0.26	-1.3
2,015,871	-		Rv1781c	0.26	-0.0
2,015,871	-		Rv1781c	0.26	-0.6
2,015,984	+		Rv1781c	0.31	+1.7
2,015,984	+		Rv1781c	0.31	-0.7
2,015,984	+		Rv1781c	0.31	-0.5
2,015,984	+		Rv1781c	0.31	-0.0
2,015,984	+		Rv1781c	0.31	-0.3
2,015,984	+		Rv1781c	0.31	+1.7
2,015,985	-		Rv1781c	0.31	+0.1
2,015,985	-		Rv1781c	0.31	+0.2
2,015,985	-		Rv1781c	0.31	-0.7
2,015,985	-		Rv1781c	0.31	+0.2
2,015,985	-		Rv1781c	0.31	-0.4
2,015,985	-		Rv1781c	0.31	-0.3
2,015,985	-		Rv1781c	0.31	+2.1
2,015,985	-		Rv1781c	0.31	-0.5
2,015,985	-		Rv1781c	0.31	-0.4
2,016,110	+		Rv1781c	0.37	-0.3