Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1562c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
1,764,715	+				-0.9
1,764,769	+				-0.8
1,764,770	-				+1.5
1,765,012	+				+0.0
1,765,280	+		Rv1561	0.74	+0.8
1,765,312	-		Rv1561	0.82	-0.4
1,765,459	+				-0.2
1,765,460	-				-0.6
1,765,719	-		Rv1562c	0.18	+0.6
1,766,113	-		Rv1562c	0.41	+0.8
1,766,113	-		Rv1562c	0.41	+1.1
1,766,166	+		Rv1562c	0.44	+0.5
1,766,462	-		Rv1562c	0.61	-0.2
1,766,462	-		Rv1562c	0.61	+0.0
1,766,498	-		Rv1562c	0.63	+0.5
1,766,538	+		Rv1562c	0.65	+0.7
1,766,841	+		Rv1562c	0.83	-0.4
1,767,003	+				+1.1
1,767,259	-				-0.1
1,767,779	-		Rv1563c	0.28	-0.5
1,767,779	-		Rv1563c	0.28	+0.7
1,768,130	+		Rv1563c	0.43	-0.0
1,768,130	+		Rv1563c	0.43	-1.4
1,768,131	-		Rv1563c	0.43	+0.3