Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1516c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
1,706,607	-				-0.9
1,706,677	-				+0.4
1,706,772	-		Rv1515c	0.16	+1.0
1,707,070	-		Rv1515c	0.49	-1.3
1,707,314	+		Rv1515c	0.76	-0.3
1,707,386	+		Rv1515c	0.84	-0.4
1,708,217	-		Rv1516c	0.68	-1.6
1,708,217	-		Rv1516c	0.68	-1.8
1,708,238	+		Rv1516c	0.70	-0.6
1,708,571	+				-2.5
1,708,571	+				-0.3
1,708,664	-				+0.9
1,708,665	+				-0.4
1,708,753	+				-0.7
1,708,855	-				-0.2
1,708,857	+				-1.0
1,708,858	-				+2.4
1,708,858	-				+0.7
1,709,064	+		Rv1517	0.25	-0.3
1,709,064	+		Rv1517	0.25	+0.2
1,709,064	+		Rv1517	0.25	-0.2
1,709,064	+		Rv1517	0.25	+0.0
1,709,065	-		Rv1517	0.25	-0.6
1,709,065	-		Rv1517	0.25	-0.1
1,709,065	-		Rv1517	0.25	-0.9
1,709,300	-		Rv1517	0.56	-0.9
1,709,495	+		Rv1517	0.82	+1.0