Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1442

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
1,619,159	-		Rv1441c	0.64	-2.9
1,619,425	+		Rv1441c	0.82	+0.8
1,619,500	+		Rv1441c	0.87	+1.0
1,619,667	+				-0.3
1,619,668	-				+0.1
1,619,739	+				-0.1
1,619,739	+				+0.1
1,619,740	-				+0.4
1,619,740	-				-0.4
1,619,758	+				+1.2
1,619,759	-				-0.2
1,619,765	+				-0.5
1,619,765	+				-0.6
1,619,765	+				-0.4
1,619,766	-				+1.4
1,619,766	-				-0.8
1,619,766	-				-0.8
1,619,778	+				-0.1
1,619,778	+				-0.2
1,619,779	+				-0.1
1,619,779	-				-0.3
1,619,779	-				-2.0
1,619,800	+				+0.3
1,619,800	+				-0.1
1,619,800	+				-1.6
1,619,800	+				-0.2
1,619,800	+				-0.5
1,619,800	+				+0.4
1,619,801	-				+0.6
1,619,802	+				-2.8
1,619,802	+				-0.5
1,619,803	-				-0.8
1,619,803	-				-0.1
1,619,924	+				+1.3
1,619,924	+				-1.1
1,619,924	+				-0.4
1,620,103	+		Rv1442	0.14	+0.4
1,620,104	-		Rv1442	0.14	+0.3
1,620,190	+		Rv1442	0.17	+1.0
1,620,211	+		Rv1442	0.18	-0.3
1,620,212	-		Rv1442	0.18	+0.6
1,620,212	-		Rv1442	0.18	+0.2
1,620,376	-		Rv1442	0.25	-0.4
1,620,401	-		Rv1442	0.27	+0.0
1,620,401	-		Rv1442	0.27	+0.0
1,620,452	+		Rv1442	0.29	+2.7
1,620,452	+		Rv1442	0.29	+2.0
1,620,554	-		Rv1442	0.33	+0.0
1,620,601	+		Rv1442	0.35	-0.1
1,620,601	+		Rv1442	0.35	-0.2
1,620,613	+		Rv1442	0.36	+0.4
1,620,632	-		Rv1442	0.37	-0.6
1,620,779	+		Rv1442	0.43	-1.1
1,620,780	-		Rv1442	0.43	-0.5
1,621,010	-		Rv1442	0.53	-0.6
1,621,052	-		Rv1442	0.55	-0.0
1,621,384	+		Rv1442	0.69	+0.1
1,621,385	-		Rv1442	0.69	-0.4
1,621,610	-		Rv1442	0.79	-0.1
1,621,610	-		Rv1442	0.79	-0.2
1,621,610	-		Rv1442	0.79	+0.2
1,622,708	+				-0.5
1,622,736	-				-0.3
1,622,736	-				-0.1
1,622,932	-				-0.9