Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1228

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
1,370,057	-		Rv1226c	0.84	-1.1
1,370,057	-		Rv1226c	0.84	+0.8
1,370,097	-		Rv1226c	0.86	-0.4
1,370,097	-		Rv1226c	0.86	-0.8
1,370,455	+		Rv1227c	0.31	-0.2
1,370,694	+		Rv1227c	0.75	-0.7
1,370,694	+		Rv1227c	0.75	+1.7
1,370,859	+				+0.6
1,370,860	-				-0.2
1,371,021	-		Rv1228	0.18	+0.3
1,371,039	+		Rv1228	0.21	-0.3
1,371,040	-		Rv1228	0.22	-1.5
1,371,040	-		Rv1228	0.22	-0.1
1,371,040	-		Rv1228	0.22	-0.2
1,371,040	-		Rv1228	0.22	-0.5
1,371,071	+		Rv1228	0.27	-0.4
1,371,071	+		Rv1228	0.27	-0.4
1,371,072	-		Rv1228	0.27	+0.1
1,371,072	-		Rv1228	0.27	-0.4
1,371,072	-		Rv1228	0.27	-0.3
1,371,151	+		Rv1228	0.41	+0.7
1,371,151	+		Rv1228	0.41	-0.2
1,371,151	+		Rv1228	0.41	+1.2
1,371,152	-		Rv1228	0.42	-0.2
1,371,423	+				-2.2
1,371,424	-				+0.0
1,371,471	+				+0.1
1,371,472	-				+0.1
1,371,472	-				+1.0
1,371,508	-				+0.7
1,371,544	-				+0.6
1,371,700	+				+0.2
1,371,700	+				+1.5
1,371,701	-				+0.1
1,371,701	-				+0.8
1,371,779	-				-0.9