Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1045

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
1,166,917	+				-0.0
1,166,917	+				+0.1
1,166,917	+				-0.3
1,166,917	+				+0.2
1,166,917	+				-0.4
1,166,918	-				+0.6
1,166,918	-				-1.0
1,166,922	+				-0.6
1,166,923	-				-0.6
1,166,923	-				-1.9
1,166,986	-				-0.3
1,167,612	+		Rv1044	0.90	-0.1
1,167,612	+		Rv1044	0.90	-0.0
1,167,646	-				-1.6
1,167,685	+				+0.7
1,167,686	-				-2.6
1,167,686	-				-0.1
1,167,716	+				-0.5
1,167,737	+				-0.3
1,167,944	+		Rv1045	0.31	+0.2
1,167,945	-		Rv1045	0.31	+0.5
1,168,035	+		Rv1045	0.41	+0.5
1,168,035	+		Rv1045	0.41	-0.6
1,168,035	+		Rv1045	0.41	+0.7
1,168,075	+		Rv1045	0.46	-0.1
1,168,250	+		Rv1045	0.65	+0.7
1,168,251	-		Rv1045	0.66	+0.2
1,168,373	+		Rv1045	0.79	-0.0
1,168,373	+		Rv1045	0.79	+0.1
1,168,442	-		Rv1045	0.87	+0.5
1,168,442	-		Rv1045	0.87	-0.3
1,168,442	-		Rv1045	0.87	-1.1
1,168,608	+				-0.9
1,168,683	+				-0.5
1,168,705	+				+0.6
1,168,706	-				-0.5
1,168,706	-				+0.0
1,168,836	+		Rv1046c	0.25	-0.4
1,168,837	-		Rv1046c	0.25	+0.1
1,168,837	-		Rv1046c	0.25	+2.1
1,168,926	+		Rv1046c	0.42	-1.2
1,169,288	+				+0.1
1,169,291	+				+0.0
1,169,291	+				+0.1
1,169,292	-				-0.1
1,169,292	-				-1.3
1,169,302	-				+2.4