Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0853c and Rv0854 are separated by 64 nucleotides Rv0854 and Rv0855 are separated by 5 nucleotides Rv0855 and Rv0856 are separated by 113 nucleotides Rv0856 and Rv0857 are separated by 27 nucleotides
Rv0853c: Rv0853c - Probable pyruvate or indole-3-pyruvate decarboxylase Pdc, at 949,436 to 951,118
Rv0853c
Rv0854: Rv0854 - Conserved protein, at 951,183 to 951,626
Rv0854
Rv0855: Rv0855 - Probable fatty-acid-CoA racemase Far, at 951,632 to 952,711
Rv0855
Rv0856: Rv0856 - Conserved hypothetical protein, at 952,825 to 953,229
Rv0856
Rv0857: Rv0857 - Conserved hypothetical protein, at 953,257 to 953,730
Rv0857
Position (kb) 951
952
953 Strain fitness (log2 ratio) -2
-1
0
1 at 951.003 kb on + strand at 951.060 kb on - strand at 951.060 kb on - strand at 951.078 kb on + strand at 951.078 kb on + strand at 951.130 kb on + strand at 951.131 kb on - strand at 951.146 kb on + strand at 951.171 kb on + strand at 951.208 kb on + strand at 951.208 kb on + strand at 951.208 kb on + strand at 951.209 kb on - strand at 951.213 kb on - strand at 951.388 kb on - strand, within Rv0854 at 951.388 kb on - strand, within Rv0854 at 951.388 kb on - strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.389 kb on + strand, within Rv0854 at 951.459 kb on + strand, within Rv0854 at 952.025 kb on + strand, within Rv0855 at 952.154 kb on + strand, within Rv0855 at 952.308 kb on - strand, within Rv0855 at 952.337 kb on + strand, within Rv0855 at 952.337 kb on + strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.338 kb on - strand, within Rv0855 at 952.451 kb on + strand, within Rv0855 at 952.451 kb on + strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.452 kb on - strand, within Rv0855 at 952.531 kb on + strand, within Rv0855 at 952.531 kb on + strand, within Rv0855 at 952.778 kb on - strand at 952.778 kb on - strand at 952.897 kb on + strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.898 kb on - strand, within Rv0856 at 952.975 kb on + strand, within Rv0856 at 952.975 kb on + strand, within Rv0856 at 952.976 kb on - strand, within Rv0856 at 952.976 kb on - strand, within Rv0856 at 953.047 kb on + strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.048 kb on - strand, within Rv0856 at 953.266 kb on - strand at 953.266 kb on - strand at 953.273 kb on + strand at 953.273 kb on + strand at 953.274 kb on - strand at 953.474 kb on + strand, within Rv0857 at 953.554 kb on + strand, within Rv0857
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 951,003 + -0.3 951,060 - +0.0 951,060 - +1.7 951,078 + -0.7 951,078 + +0.2 951,130 + -0.3 951,131 - -0.2 951,146 + -0.6 951,171 + -0.2 951,208 + -0.9 951,208 + +0.4 951,208 + -0.4 951,209 - -2.5 951,213 - +1.7 951,388 - Rv0854 0.46 -0.2 951,388 - Rv0854 0.46 -0.1 951,388 - Rv0854 0.46 -0.1 951,389 + Rv0854 0.46 -0.3 951,389 + Rv0854 0.46 -0.0 951,389 + Rv0854 0.46 -0.3 951,459 + Rv0854 0.62 -0.1 952,025 + Rv0855 0.36 -0.9 952,154 + Rv0855 0.48 -0.5 952,308 - Rv0855 0.63 +0.1 952,337 + Rv0855 0.65 +0.0 952,337 + Rv0855 0.65 -0.6 952,338 - Rv0855 0.65 -0.9 952,338 - Rv0855 0.65 -1.1 952,338 - Rv0855 0.65 -0.2 952,451 + Rv0855 0.76 -1.1 952,451 + Rv0855 0.76 -0.7 952,452 - Rv0855 0.76 -0.7 952,452 - Rv0855 0.76 -0.5 952,452 - Rv0855 0.76 -0.2 952,531 + Rv0855 0.83 -0.7 952,531 + Rv0855 0.83 -0.9 952,778 - -0.9 952,778 - -0.2 952,897 + Rv0856 0.18 -1.3 952,898 - Rv0856 0.18 +0.1 952,898 - Rv0856 0.18 +0.1 952,898 - Rv0856 0.18 +1.0 952,975 + Rv0856 0.37 -0.3 952,975 + Rv0856 0.37 -0.5 952,976 - Rv0856 0.37 -0.1 952,976 - Rv0856 0.37 -0.2 953,047 + Rv0856 0.55 +0.3 953,048 - Rv0856 0.55 -0.5 953,048 - Rv0856 0.55 +0.5 953,048 - Rv0856 0.55 -0.8 953,048 - Rv0856 0.55 -0.0 953,266 - -0.8 953,266 - +0.1 953,273 + -0.2 953,273 + -0.1 953,274 - -0.0 953,474 + Rv0857 0.46 +0.4 953,554 + Rv0857 0.63 -0.1
Or see this region's nucleotide sequence