Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0830 and Rv0831c are separated by 18 nucleotides Rv0831c and GFF867 are separated by 93 nucleotides GFF867 and GFF868 are separated by 123 nucleotides GFF868 and GFF869 are separated by 37 nucleotides GFF869 and GFF870 are separated by 29 nucleotides
Rv0830: Rv0830 - Possible S-adenosylmethionine-dependent methyltransferase, at 921,970 to 922,875
Rv0830
Rv0831c: Rv0831c - Conserved protein, at 922,894 to 923,709
Rv0831c
GFF867 - tRNA-Lys, at 923,803 to 923,875
GFF867
GFF868 - tRNA-Glu, at 923,999 to 924,072
GFF868
GFF869 - tRNA-Asp, at 924,110 to 924,183
GFF869
GFF870 - tRNA-Phe, at 924,213 to 924,286
GFF870
Position (kb) 922
923
924 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 921.944 kb on + strand at 921.975 kb on - strand at 921.975 kb on - strand at 922.090 kb on + strand, within Rv0830 at 922.091 kb on - strand, within Rv0830 at 922.119 kb on + strand, within Rv0830 at 922.119 kb on + strand, within Rv0830 at 922.120 kb on - strand, within Rv0830 at 922.120 kb on - strand, within Rv0830 at 922.120 kb on - strand, within Rv0830 at 922.524 kb on - strand, within Rv0830 at 922.524 kb on - strand, within Rv0830 at 922.524 kb on - strand, within Rv0830 at 922.525 kb on + strand, within Rv0830 at 922.525 kb on + strand, within Rv0830 at 922.651 kb on + strand, within Rv0830 at 922.652 kb on - strand, within Rv0830 at 922.652 kb on - strand, within Rv0830 at 922.705 kb on + strand, within Rv0830 at 922.706 kb on - strand, within Rv0830 at 922.706 kb on - strand, within Rv0830 at 922.735 kb on + strand, within Rv0830 at 922.735 kb on + strand, within Rv0830 at 922.736 kb on - strand, within Rv0830 at 922.736 kb on - strand, within Rv0830 at 922.736 kb on - strand, within Rv0830 at 922.736 kb on - strand, within Rv0830 at 922.739 kb on + strand, within Rv0830 at 922.740 kb on - strand, within Rv0830 at 922.770 kb on + strand, within Rv0830 at 922.771 kb on - strand, within Rv0830 at 922.787 kb on - strand at 922.787 kb on - strand at 922.787 kb on - strand at 922.849 kb on + strand at 922.849 kb on + strand at 922.850 kb on - strand at 922.850 kb on - strand at 922.895 kb on + strand at 922.964 kb on + strand at 922.965 kb on - strand at 922.987 kb on + strand, within Rv0831c at 922.987 kb on + strand, within Rv0831c at 922.988 kb on - strand, within Rv0831c at 923.003 kb on + strand, within Rv0831c at 923.003 kb on + strand, within Rv0831c at 923.041 kb on - strand, within Rv0831c at 923.041 kb on - strand, within Rv0831c at 923.083 kb on + strand, within Rv0831c at 923.083 kb on + strand, within Rv0831c at 923.084 kb on - strand, within Rv0831c at 923.099 kb on + strand, within Rv0831c at 923.099 kb on + strand, within Rv0831c at 923.099 kb on + strand, within Rv0831c at 923.100 kb on - strand, within Rv0831c at 923.100 kb on - strand, within Rv0831c at 923.100 kb on - strand, within Rv0831c at 923.164 kb on + strand, within Rv0831c at 923.164 kb on + strand, within Rv0831c at 923.165 kb on - strand, within Rv0831c at 923.165 kb on - strand, within Rv0831c at 923.391 kb on + strand, within Rv0831c at 923.391 kb on + strand, within Rv0831c at 923.392 kb on - strand, within Rv0831c at 923.480 kb on + strand, within Rv0831c at 923.480 kb on + strand, within Rv0831c at 923.480 kb on + strand, within Rv0831c at 923.569 kb on + strand, within Rv0831c at 923.580 kb on + strand, within Rv0831c at 923.580 kb on + strand, within Rv0831c at 923.581 kb on - strand, within Rv0831c at 923.581 kb on - strand, within Rv0831c at 923.581 kb on - strand, within Rv0831c at 923.581 kb on - strand, within Rv0831c at 923.709 kb on + strand at 923.709 kb on + strand at 923.709 kb on + strand at 923.722 kb on + strand at 923.723 kb on - strand at 923.890 kb on + strand at 923.939 kb on + strand at 923.939 kb on + strand at 923.940 kb on - strand at 924.304 kb on - strand at 924.324 kb on + strand at 924.324 kb on + strand at 924.325 kb on - strand at 924.325 kb on - strand at 924.325 kb on - strand at 924.325 kb on - strand at 924.328 kb on + strand at 924.329 kb on - strand at 924.417 kb on - strand at 924.652 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 921,944 + -0.4 921,975 - -0.1 921,975 - -0.2 922,090 + Rv0830 0.13 -1.9 922,091 - Rv0830 0.13 +1.3 922,119 + Rv0830 0.16 -0.7 922,119 + Rv0830 0.16 +0.1 922,120 - Rv0830 0.17 -0.0 922,120 - Rv0830 0.17 -0.4 922,120 - Rv0830 0.17 -0.4 922,524 - Rv0830 0.61 +0.1 922,524 - Rv0830 0.61 +0.1 922,524 - Rv0830 0.61 +0.2 922,525 + Rv0830 0.61 -1.0 922,525 + Rv0830 0.61 -0.3 922,651 + Rv0830 0.75 -0.2 922,652 - Rv0830 0.75 +0.8 922,652 - Rv0830 0.75 +0.7 922,705 + Rv0830 0.81 +0.7 922,706 - Rv0830 0.81 -0.6 922,706 - Rv0830 0.81 +0.1 922,735 + Rv0830 0.84 +0.7 922,735 + Rv0830 0.84 -0.7 922,736 - Rv0830 0.85 +0.1 922,736 - Rv0830 0.85 +0.2 922,736 - Rv0830 0.85 -0.3 922,736 - Rv0830 0.85 +0.6 922,739 + Rv0830 0.85 +3.0 922,740 - Rv0830 0.85 -0.6 922,770 + Rv0830 0.88 -0.8 922,771 - Rv0830 0.88 -0.6 922,787 - -2.9 922,787 - -1.4 922,787 - +0.3 922,849 + -0.3 922,849 + +0.5 922,850 - -0.1 922,850 - -0.5 922,895 + -0.7 922,964 + -0.0 922,965 - -0.2 922,987 + Rv0831c 0.11 +0.1 922,987 + Rv0831c 0.11 -1.3 922,988 - Rv0831c 0.12 +1.2 923,003 + Rv0831c 0.13 -0.2 923,003 + Rv0831c 0.13 -0.6 923,041 - Rv0831c 0.18 -0.2 923,041 - Rv0831c 0.18 -0.7 923,083 + Rv0831c 0.23 -0.2 923,083 + Rv0831c 0.23 -0.6 923,084 - Rv0831c 0.23 +0.4 923,099 + Rv0831c 0.25 +0.7 923,099 + Rv0831c 0.25 +1.4 923,099 + Rv0831c 0.25 -1.1 923,100 - Rv0831c 0.25 +0.0 923,100 - Rv0831c 0.25 +1.5 923,100 - Rv0831c 0.25 +0.9 923,164 + Rv0831c 0.33 +0.1 923,164 + Rv0831c 0.33 +2.7 923,165 - Rv0831c 0.33 -0.5 923,165 - Rv0831c 0.33 +0.4 923,391 + Rv0831c 0.61 -0.0 923,391 + Rv0831c 0.61 +1.5 923,392 - Rv0831c 0.61 +0.1 923,480 + Rv0831c 0.72 +0.1 923,480 + Rv0831c 0.72 +1.0 923,480 + Rv0831c 0.72 -0.9 923,569 + Rv0831c 0.83 -0.6 923,580 + Rv0831c 0.84 +1.8 923,580 + Rv0831c 0.84 +0.1 923,581 - Rv0831c 0.84 -0.2 923,581 - Rv0831c 0.84 +0.7 923,581 - Rv0831c 0.84 +0.7 923,581 - Rv0831c 0.84 -0.7 923,709 + -1.1 923,709 + +0.3 923,709 + -0.5 923,722 + -0.4 923,723 - -1.3 923,890 + +0.3 923,939 + -1.5 923,939 + -1.0 923,940 - +1.1 924,304 - +0.1 924,324 + +0.3 924,324 + -0.0 924,325 - -0.0 924,325 - +0.2 924,325 - -1.2 924,325 - -0.3 924,328 + -1.3 924,329 - -0.2 924,417 - -1.3 924,652 + -1.4
Or see this region's nucleotide sequence