Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0622 and Rv0623 are separated by 92 nucleotides Rv0623 and Rv0624 overlap by 1 nucleotides Rv0624 and Rv0625c are separated by 93 nucleotides Rv0625c and Rv0626 are separated by 131 nucleotides Rv0626 and Rv0627 overlap by 4 nucleotides Rv0627 and Rv0628c are separated by 71 nucleotides
Rv0622: Rv0622 - Possible membrane protein, at 715,370 to 716,317
Rv0622
Rv0623: Rv0623 - Possible antitoxin VapB30, at 716,410 to 716,664
Rv0623
Rv0624: Rv0624 - Possible toxin VapC30. Contains PIN domain., at 716,664 to 717,059
Rv0624
Rv0625c: Rv0625c - Probable conserved transmembrane protein, at 717,153 to 717,893
Rv0625c
Rv0626: Rv0626 - Possible antitoxin VapB5, at 718,025 to 718,285
Rv0626
Rv0627: Rv0627 - Possible toxin VapC5, at 718,282 to 718,689
Rv0627
Rv0628c: Rv0628c - Conserved hypothetical protein, at 718,761 to 719,912
Rv0628c
Position (kb) 717
718 Strain fitness (log2 ratio) -2
-1
0
1
2 at 716.231 kb on + strand at 716.232 kb on - strand at 716.422 kb on - strand at 716.422 kb on - strand at 716.638 kb on + strand, within Rv0623 at 716.639 kb on - strand at 716.797 kb on + strand, within Rv0624 at 716.798 kb on - strand, within Rv0624 at 716.919 kb on + strand, within Rv0624 at 716.920 kb on - strand, within Rv0624 at 716.952 kb on + strand, within Rv0624 at 716.953 kb on - strand, within Rv0624 at 716.970 kb on + strand, within Rv0624 at 716.971 kb on - strand, within Rv0624 at 717.057 kb on + strand at 717.058 kb on - strand at 717.058 kb on - strand at 717.064 kb on + strand at 717.428 kb on - strand, within Rv0625c at 717.428 kb on - strand, within Rv0625c at 717.718 kb on + strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.719 kb on - strand, within Rv0625c at 717.802 kb on + strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.803 kb on - strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 717.813 kb on + strand, within Rv0625c at 718.001 kb on + strand at 718.020 kb on + strand at 718.054 kb on + strand, within Rv0626
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 716,231 + +0.8 716,232 - -0.5 716,422 - -0.0 716,422 - -0.4 716,638 + Rv0623 0.89 -0.2 716,639 - +0.0 716,797 + Rv0624 0.34 +0.0 716,798 - Rv0624 0.34 -0.3 716,919 + Rv0624 0.64 -0.3 716,920 - Rv0624 0.65 -0.0 716,952 + Rv0624 0.73 +0.2 716,953 - Rv0624 0.73 +0.0 716,970 + Rv0624 0.77 -0.5 716,971 - Rv0624 0.78 -0.2 717,057 + -0.5 717,058 - -0.9 717,058 - +0.8 717,064 + -1.8 717,428 - Rv0625c 0.37 -0.3 717,428 - Rv0625c 0.37 +2.7 717,718 + Rv0625c 0.76 -1.3 717,719 - Rv0625c 0.76 -1.5 717,719 - Rv0625c 0.76 -1.2 717,802 + Rv0625c 0.88 -0.6 717,803 - Rv0625c 0.88 -0.5 717,803 - Rv0625c 0.88 -0.4 717,813 + Rv0625c 0.89 -0.4 717,813 + Rv0625c 0.89 -1.8 718,001 + -1.6 718,020 + -0.4 718,054 + Rv0626 0.11 -0.1
Or see this region's nucleotide sequence