Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0519c and Rv0520 are separated by 180 nucleotides Rv0520 and Rv0521 overlap by 8 nucleotides Rv0521 and Rv0522 are separated by 134 nucleotides
Rv0519c: Rv0519c - Possible conserved membrane protein, at 611,172 to 612,074
Rv0519c
Rv0520: Rv0520 - Possible methyltransferase/methylase (fragment), at 612,255 to 612,605
Rv0520
Rv0521: Rv0521 - Possible methyltransferase/methylase (fragment), at 612,598 to 612,903
Rv0521
Rv0522: Rv0522 - Probable GABA permease GabP (4-amino butyrate transport carrier) (GAMA-aminobutyrate permease), at 613,038 to 614,342
Rv0522
Position (kb) 612
613 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 611.300 kb on - strand, within Rv0519c at 611.380 kb on + strand, within Rv0519c at 611.381 kb on - strand, within Rv0519c at 611.507 kb on - strand, within Rv0519c at 611.553 kb on - strand, within Rv0519c at 611.632 kb on + strand, within Rv0519c at 611.632 kb on + strand, within Rv0519c at 611.633 kb on - strand, within Rv0519c at 612.193 kb on - strand at 612.254 kb on + strand at 612.255 kb on - strand at 612.314 kb on + strand, within Rv0520 at 612.314 kb on + strand, within Rv0520 at 612.315 kb on - strand, within Rv0520 at 612.400 kb on - strand, within Rv0520 at 612.555 kb on + strand, within Rv0520 at 612.597 kb on + strand at 612.598 kb on - strand at 612.598 kb on - strand at 612.674 kb on - strand, within Rv0521 at 612.674 kb on - strand, within Rv0521 at 612.759 kb on - strand, within Rv0521 at 612.846 kb on - strand, within Rv0521 at 612.956 kb on - strand at 612.988 kb on + strand at 612.988 kb on + strand at 612.989 kb on - strand at 612.993 kb on - strand at 613.047 kb on - strand at 613.128 kb on + strand at 613.219 kb on - strand, within Rv0522 at 613.269 kb on + strand, within Rv0522 at 613.328 kb on - strand, within Rv0522
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 611,300 - Rv0519c 0.14 -1.3 611,380 + Rv0519c 0.23 +1.7 611,381 - Rv0519c 0.23 +0.1 611,507 - Rv0519c 0.37 +0.0 611,553 - Rv0519c 0.42 -1.1 611,632 + Rv0519c 0.51 -0.2 611,632 + Rv0519c 0.51 +1.3 611,633 - Rv0519c 0.51 -1.4 612,193 - -0.5 612,254 + +0.1 612,255 - -0.5 612,314 + Rv0520 0.17 -0.3 612,314 + Rv0520 0.17 -0.5 612,315 - Rv0520 0.17 -1.8 612,400 - Rv0520 0.41 -0.6 612,555 + Rv0520 0.85 +1.1 612,597 + +3.1 612,598 - -0.2 612,598 - +1.1 612,674 - Rv0521 0.25 +0.1 612,674 - Rv0521 0.25 -0.9 612,759 - Rv0521 0.53 -0.6 612,846 - Rv0521 0.81 -0.3 612,956 - -0.5 612,988 + -0.2 612,988 + -0.5 612,989 - -0.5 612,993 - -0.3 613,047 - -0.6 613,128 + +1.0 613,219 - Rv0522 0.14 -0.4 613,269 + Rv0522 0.18 +0.3 613,328 - Rv0522 0.22 -0.6
Or see this region's nucleotide sequence