Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0392c and Rv0393 are separated by 141 nucleotides Rv0393 and Rv0394c are separated by 15 nucleotides Rv0394c and Rv0395 are separated by 98 nucleotides
Rv0392c: Rv0392c - Probable membrane NADH dehydrogenase NdhA, at 471,227 to 472,639
Rv0392c
Rv0393: Rv0393 - Conserved 13E12 repeat family protein, at 472,781 to 474,106
Rv0393
Rv0394c: Rv0394c - Possible secreted protein, at 474,122 to 474,841
Rv0394c
Rv0395: Rv0395 - Hypothetical protein, at 474,940 to 475,344
Rv0395
Position (kb) 472
473
474
475 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 472.037 kb on - strand, within Rv0392c at 472.474 kb on - strand, within Rv0392c at 472.541 kb on - strand at 472.673 kb on + strand at 472.674 kb on - strand at 472.674 kb on - strand at 472.681 kb on - strand at 472.706 kb on - strand at 472.854 kb on + strand at 472.854 kb on + strand at 472.855 kb on - strand at 472.855 kb on - strand at 472.894 kb on - strand at 472.992 kb on + strand, within Rv0393 at 473.103 kb on + strand, within Rv0393 at 473.104 kb on - strand, within Rv0393 at 473.213 kb on + strand, within Rv0393 at 473.214 kb on - strand, within Rv0393 at 473.214 kb on - strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.225 kb on + strand, within Rv0393 at 473.226 kb on - strand, within Rv0393 at 474.225 kb on + strand, within Rv0394c at 474.226 kb on - strand, within Rv0394c at 474.386 kb on - strand, within Rv0394c at 474.476 kb on - strand, within Rv0394c at 474.593 kb on - strand, within Rv0394c at 474.698 kb on + strand, within Rv0394c at 474.841 kb on + strand at 474.854 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand at 474.854 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 472,037 - Rv0392c 0.57 +1.4 472,474 - Rv0392c 0.88 +0.0 472,541 - -0.0 472,673 + -0.7 472,674 - -0.1 472,674 - +0.3 472,681 - -0.5 472,706 - -0.8 472,854 + +0.6 472,854 + -3.9 472,855 - -0.3 472,855 - -0.0 472,894 - +0.4 472,992 + Rv0393 0.16 -0.3 473,103 + Rv0393 0.24 +1.7 473,104 - Rv0393 0.24 -0.1 473,213 + Rv0393 0.33 -1.8 473,214 - Rv0393 0.33 -0.2 473,214 - Rv0393 0.33 +3.6 473,225 + Rv0393 0.33 -0.4 473,225 + Rv0393 0.33 -0.1 473,225 + Rv0393 0.33 +1.4 473,226 - Rv0393 0.34 -0.3 474,225 + Rv0394c 0.14 -0.5 474,226 - Rv0394c 0.14 -0.0 474,386 - Rv0394c 0.37 -0.1 474,476 - Rv0394c 0.49 -0.1 474,593 - Rv0394c 0.65 -0.5 474,698 + Rv0394c 0.80 +1.7 474,841 + -0.2 474,854 - +0.9 474,854 - -0.0 474,854 - +0.8 474,854 - -0.6
Or see this region's nucleotide sequence