Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0132c and Rv0133 are separated by 86 nucleotides Rv0133 and Rv0134 are separated by 296 nucleotides Rv0134 and Rv0135c overlap by 30 nucleotides Rv0135c and Rv0136 are separated by 116 nucleotides
Rv0132c: Rv0132c - Putative F420-dependent glucose-6-phosphate dehydrogenase Fgd2, at 159,700 to 160,782
Rv0132c
Rv0133: Rv0133 - GCN5-related N-acetyltransferase, at 160,869 to 161,474
Rv0133
Rv0134: Rv0134 - Possible epoxide hydrolase EphF (epoxide hydratase) (arene-oxide hydratase), at 161,771 to 162,673
Rv0134
Rv0135c: Rv0135c - Possible transcriptional regulatory protein, at 162,644 to 163,249
Rv0135c
Rv0136: Rv0136 - Probable cytochrome P450 138 Cyp138, at 163,366 to 164,691
Rv0136
Position (kb) 161
162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 160.941 kb on + strand, within Rv0133 at 160.941 kb on + strand, within Rv0133 at 160.966 kb on + strand, within Rv0133 at 160.967 kb on - strand, within Rv0133 at 161.245 kb on - strand, within Rv0133 at 161.245 kb on - strand, within Rv0133 at 161.245 kb on - strand, within Rv0133 at 161.349 kb on + strand, within Rv0133 at 161.385 kb on + strand, within Rv0133 at 161.386 kb on - strand, within Rv0133 at 161.386 kb on - strand, within Rv0133 at 161.386 kb on - strand, within Rv0133 at 161.446 kb on + strand at 161.607 kb on + strand at 161.608 kb on - strand at 161.702 kb on - strand at 161.702 kb on - strand at 161.702 kb on - strand at 161.702 kb on - strand at 161.756 kb on + strand at 161.756 kb on + strand at 161.756 kb on + strand at 161.878 kb on - strand, within Rv0134 at 162.011 kb on + strand, within Rv0134 at 162.013 kb on + strand, within Rv0134 at 162.013 kb on + strand, within Rv0134 at 162.013 kb on + strand, within Rv0134 at 162.013 kb on + strand, within Rv0134 at 162.014 kb on - strand, within Rv0134 at 162.211 kb on + strand, within Rv0134 at 162.212 kb on - strand, within Rv0134 at 162.212 kb on - strand, within Rv0134 at 162.212 kb on - strand, within Rv0134 at 162.212 kb on - strand, within Rv0134 at 162.280 kb on + strand, within Rv0134 at 162.280 kb on + strand, within Rv0134 at 162.356 kb on + strand, within Rv0134 at 162.356 kb on + strand, within Rv0134 at 162.645 kb on + strand at 162.645 kb on + strand at 162.645 kb on + strand at 162.646 kb on - strand at 162.646 kb on - strand at 162.646 kb on - strand at 162.792 kb on - strand, within Rv0135c at 162.846 kb on - strand, within Rv0135c at 162.846 kb on - strand, within Rv0135c at 162.954 kb on + strand, within Rv0135c at 162.955 kb on - strand, within Rv0135c at 162.955 kb on - strand, within Rv0135c at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.262 kb on + strand at 163.263 kb on - strand at 163.267 kb on - strand at 163.267 kb on - strand at 163.267 kb on - strand at 163.534 kb on + strand, within Rv0136 at 163.535 kb on - strand, within Rv0136 at 163.535 kb on - strand, within Rv0136 at 163.535 kb on - strand, within Rv0136
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 160,941 + Rv0133 0.12 -0.3 160,941 + Rv0133 0.12 -0.0 160,966 + Rv0133 0.16 +0.1 160,967 - Rv0133 0.16 -0.8 161,245 - Rv0133 0.62 -0.7 161,245 - Rv0133 0.62 -1.1 161,245 - Rv0133 0.62 +0.5 161,349 + Rv0133 0.79 +0.6 161,385 + Rv0133 0.85 -0.3 161,386 - Rv0133 0.85 +0.0 161,386 - Rv0133 0.85 +0.3 161,386 - Rv0133 0.85 -0.4 161,446 + +3.0 161,607 + -1.4 161,608 - +0.2 161,702 - +0.2 161,702 - +0.2 161,702 - -1.6 161,702 - -2.0 161,756 + -1.8 161,756 + -0.4 161,756 + -0.2 161,878 - Rv0134 0.12 -0.3 162,011 + Rv0134 0.27 -1.2 162,013 + Rv0134 0.27 -0.9 162,013 + Rv0134 0.27 +2.3 162,013 + Rv0134 0.27 +1.5 162,013 + Rv0134 0.27 +0.9 162,014 - Rv0134 0.27 +0.2 162,211 + Rv0134 0.49 +0.9 162,212 - Rv0134 0.49 -1.6 162,212 - Rv0134 0.49 +1.1 162,212 - Rv0134 0.49 -0.2 162,212 - Rv0134 0.49 +1.8 162,280 + Rv0134 0.56 -0.6 162,280 + Rv0134 0.56 +0.0 162,356 + Rv0134 0.65 -0.4 162,356 + Rv0134 0.65 -0.4 162,645 + -0.3 162,645 + -0.2 162,645 + -0.6 162,646 - +0.2 162,646 - +0.6 162,646 - -0.4 162,792 - Rv0135c 0.24 -0.6 162,846 - Rv0135c 0.33 -3.3 162,846 - Rv0135c 0.33 +0.6 162,954 + Rv0135c 0.51 -1.2 162,955 - Rv0135c 0.51 -1.4 162,955 - Rv0135c 0.51 +0.2 163,262 + -0.3 163,262 + -0.4 163,262 + -1.1 163,262 + -0.4 163,262 + -1.1 163,262 + +2.6 163,262 + -0.8 163,263 - -0.1 163,267 - +0.0 163,267 - -0.2 163,267 - -0.8 163,534 + Rv0136 0.13 +0.0 163,535 - Rv0136 0.13 -0.4 163,535 - Rv0136 0.13 -0.1 163,535 - Rv0136 0.13 -0.5
Or see this region's nucleotide sequence