Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0090 and Rv0091 are separated by 433 nucleotides Rv0091 and Rv0092 are separated by 131 nucleotides
Rv0090: Rv0090 - Possible membrane protein, at 98,480 to 99,250
Rv0090
Rv0091: Rv0091 - Probable bifunctional MTA/SAH nucleosidase Mtn: 5'-methylthioadenosine nucleosidase (methylthioadenosine methylthioribohydrolase) + S-adenosylhomocysteine nucleosidase (S-adenosyl-L-homocysteine homocysteinylribohydrolase), at 99,684 to 100,451
Rv0091
Rv0092: Rv0092 - Cation transporter P-type ATPase a CtpA, at 100,583 to 102,868
Rv0092
Position (kb) 99
100
101 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 98.693 kb on - strand, within Rv0090 at 98.819 kb on - strand, within Rv0090 at 99.137 kb on + strand, within Rv0090 at 99.138 kb on - strand, within Rv0090 at 99.188 kb on + strand at 99.940 kb on + strand, within Rv0091 at 99.941 kb on - strand, within Rv0091 at 99.941 kb on - strand, within Rv0091 at 100.021 kb on - strand, within Rv0091 at 100.176 kb on + strand, within Rv0091 at 100.179 kb on + strand, within Rv0091 at 100.179 kb on + strand, within Rv0091 at 100.207 kb on - strand, within Rv0091 at 100.207 kb on - strand, within Rv0091 at 100.505 kb on + strand at 100.517 kb on + strand at 100.518 kb on - strand at 100.629 kb on + strand at 100.805 kb on + strand at 100.983 kb on + strand, within Rv0092 at 100.984 kb on - strand, within Rv0092 at 101.124 kb on - strand, within Rv0092 at 101.124 kb on - strand, within Rv0092 at 101.195 kb on - strand, within Rv0092 at 101.195 kb on - strand, within Rv0092 at 101.319 kb on + strand, within Rv0092 at 101.320 kb on - strand, within Rv0092 at 101.409 kb on + strand, within Rv0092 at 101.409 kb on + strand, within Rv0092 at 101.410 kb on - strand, within Rv0092
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 98,693 - Rv0090 0.28 -1.8 98,819 - Rv0090 0.44 -0.4 99,137 + Rv0090 0.85 +0.1 99,138 - Rv0090 0.85 +1.8 99,188 + -0.0 99,940 + Rv0091 0.33 +2.8 99,941 - Rv0091 0.33 -0.2 99,941 - Rv0091 0.33 +0.7 100,021 - Rv0091 0.44 -1.2 100,176 + Rv0091 0.64 +2.5 100,179 + Rv0091 0.64 -0.1 100,179 + Rv0091 0.64 +1.0 100,207 - Rv0091 0.68 +0.8 100,207 - Rv0091 0.68 +1.2 100,505 + -1.1 100,517 + -1.4 100,518 - +0.8 100,629 + -0.6 100,805 + -1.2 100,983 + Rv0092 0.17 -0.7 100,984 - Rv0092 0.18 -1.9 101,124 - Rv0092 0.24 -1.1 101,124 - Rv0092 0.24 -0.5 101,195 - Rv0092 0.27 -0.1 101,195 - Rv0092 0.27 -0.5 101,319 + Rv0092 0.32 -0.4 101,320 - Rv0092 0.32 -1.7 101,409 + Rv0092 0.36 -0.3 101,409 + Rv0092 0.36 +0.8 101,410 - Rv0092 0.36 +1.9
Or see this region's nucleotide sequence