Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0066c and Rv0067c are separated by 117 nucleotides Rv0067c and Rv0068 are separated by 102 nucleotides Rv0068 and Rv0069c are separated by 24 nucleotides
Rv0066c: Rv0066c - Probable isocitrate dehydrogenase [NADP] Icd2 (oxalosuccinate decarboxylase) (IDH) (NADP+-specific ICDH) (IDP), at 72,274 to 74,511
Rv0066c
Rv0067c: Rv0067c - Possible transcriptional regulatory protein (possibly TetR-family), at 74,629 to 75,198
Rv0067c
Rv0068: Rv0068 - Probable oxidoreductase, at 75,301 to 76,212
Rv0068
Rv0069c: Rv0069c - Probable L-serine dehydratase SdaA (L-serine deaminase) (SDH) (L-SD), at 76,237 to 77,622
Rv0069c
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 74.563 kb on - strand at 74.722 kb on + strand, within Rv0067c at 74.761 kb on + strand, within Rv0067c at 75.156 kb on + strand at 75.189 kb on + strand at 75.190 kb on - strand at 75.286 kb on + strand at 75.287 kb on - strand at 75.613 kb on + strand, within Rv0068 at 75.613 kb on + strand, within Rv0068 at 75.613 kb on + strand, within Rv0068 at 75.614 kb on - strand, within Rv0068 at 75.614 kb on - strand, within Rv0068 at 75.614 kb on - strand, within Rv0068 at 75.614 kb on - strand, within Rv0068 at 75.614 kb on - strand, within Rv0068 at 75.616 kb on - strand, within Rv0068 at 76.070 kb on - strand, within Rv0068 at 76.298 kb on + strand at 77.006 kb on - strand, within Rv0069c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5 remove 74,563 - +0.3 74,722 + Rv0067c 0.16 -0.2 74,761 + Rv0067c 0.23 -3.1 75,156 + +0.4 75,189 + +0.8 75,190 - -0.6 75,286 + -3.2 75,287 - -1.3 75,613 + Rv0068 0.34 +1.5 75,613 + Rv0068 0.34 -0.2 75,613 + Rv0068 0.34 +1.6 75,614 - Rv0068 0.34 +0.3 75,614 - Rv0068 0.34 +0.2 75,614 - Rv0068 0.34 +0.4 75,614 - Rv0068 0.34 -0.3 75,614 - Rv0068 0.34 -0.7 75,616 - Rv0068 0.35 +0.8 76,070 - Rv0068 0.84 -0.2 76,298 + -0.2 77,006 - Rv0069c 0.55 +0.3
Or see this region's nucleotide sequence