Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0152c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv0151c and Rv0152c are separated by 9 nucleotidesRv0152c and Rv0153c are separated by 258 nucleotides Rv0151c: Rv0151c - PE family protein PE1, at 177,543 to 179,309 Rv0151c Rv0152c: Rv0152c - PE family protein PE2, at 179,319 to 180,896 Rv0152c Rv0153c: Rv0153c - Phosphotyrosine protein phosphatase PTPB (protein-tyrosine-phosphatase) (PTPase), at 181,155 to 181,985 Rv0153c Position (kb) 179 180 181Strain fitness (log2 ratio) -2 -1 0 1 2 3at 178.348 kb on + strand, within Rv0151cat 178.348 kb on + strand, within Rv0151cat 178.360 kb on + strand, within Rv0151cat 178.360 kb on + strand, within Rv0151cat 178.361 kb on - strand, within Rv0151cat 178.400 kb on - strand, within Rv0151cat 178.450 kb on - strand, within Rv0151cat 178.450 kb on - strand, within Rv0151cat 178.641 kb on + strand, within Rv0151cat 178.641 kb on + strand, within Rv0151cat 178.698 kb on + strand, within Rv0151cat 178.698 kb on + strand, within Rv0151cat 178.698 kb on + strand, within Rv0151cat 178.698 kb on + strand, within Rv0151cat 178.698 kb on + strand, within Rv0151cat 178.699 kb on - strand, within Rv0151cat 178.699 kb on - strand, within Rv0151cat 178.699 kb on - strand, within Rv0151cat 178.780 kb on + strand, within Rv0151cat 178.780 kb on + strand, within Rv0151cat 178.829 kb on + strand, within Rv0151cat 178.874 kb on + strand, within Rv0151cat 178.875 kb on - strand, within Rv0151cat 178.875 kb on - strand, within Rv0151cat 179.111 kb on + strand, within Rv0151cat 179.184 kb on + strandat 179.185 kb on - strandat 179.188 kb on + strandat 179.188 kb on + strandat 179.189 kb on - strandat 179.189 kb on - strandat 179.189 kb on - strandat 179.189 kb on - strandat 179.189 kb on - strandat 179.245 kb on + strandat 179.246 kb on - strandat 179.246 kb on - strandat 179.256 kb on + strandat 179.256 kb on + strandat 179.256 kb on + strandat 179.257 kb on - strandat 179.257 kb on - strandat 179.257 kb on - strandat 179.453 kb on + strandat 179.472 kb on + strandat 179.472 kb on + strandat 179.472 kb on + strandat 179.551 kb on + strand, within Rv0152cat 179.611 kb on + strand, within Rv0152cat 179.612 kb on - strand, within Rv0152cat 179.612 kb on - strand, within Rv0152cat 179.860 kb on + strand, within Rv0152cat 179.860 kb on + strand, within Rv0152cat 179.861 kb on - strand, within Rv0152cat 179.861 kb on - strand, within Rv0152cat 179.861 kb on - strand, within Rv0152cat 179.873 kb on - strand, within Rv0152cat 179.878 kb on + strand, within Rv0152cat 179.878 kb on + strand, within Rv0152cat 179.893 kb on + strand, within Rv0152cat 180.010 kb on + strand, within Rv0152cat 180.010 kb on + strand, within Rv0152cat 180.010 kb on + strand, within Rv0152cat 180.011 kb on - strand, within Rv0152cat 180.011 kb on - strand, within Rv0152cat 180.011 kb on - strand, within Rv0152cat 180.013 kb on + strand, within Rv0152cat 180.014 kb on - strand, within Rv0152cat 180.029 kb on + strand, within Rv0152cat 180.030 kb on - strand, within Rv0152cat 180.030 kb on - strand, within Rv0152cat 180.030 kb on - strand, within Rv0152cat 180.030 kb on - strand, within Rv0152cat 180.049 kb on - strand, within Rv0152cat 180.053 kb on + strand, within Rv0152cat 180.054 kb on - strand, within Rv0152cat 180.091 kb on + strand, within Rv0152cat 180.091 kb on + strand, within Rv0152cat 180.102 kb on + strand, within Rv0152cat 180.102 kb on + strand, within Rv0152cat 180.102 kb on + strand, within Rv0152cat 180.103 kb on - strand, within Rv0152cat 180.103 kb on - strand, within Rv0152cat 180.182 kb on - strand, within Rv0152cat 180.193 kb on + strand, within Rv0152cat 180.193 kb on + strand, within Rv0152cat 180.209 kb on - strand, within Rv0152cat 180.236 kb on - strand, within Rv0152cat 180.236 kb on - strand, within Rv0152cat 180.236 kb on - strand, within Rv0152cat 180.236 kb on - strand, within Rv0152cat 180.453 kb on + strand, within Rv0152cat 180.454 kb on - strand, within Rv0152cat 180.454 kb on - strand, within Rv0152cat 180.454 kb on - strand, within Rv0152cat 180.454 kb on - strand, within Rv0152cat 180.454 kb on - strand, within Rv0152cat 180.536 kb on - strand, within Rv0152cat 180.564 kb on + strand, within Rv0152cat 180.585 kb on - strand, within Rv0152cat 180.621 kb on + strand, within Rv0152cat 180.621 kb on + strand, within Rv0152cat 180.769 kb on + strandat 180.770 kb on - strandat 180.770 kb on - strandat 180.806 kb on + strandat 180.807 kb on - strandat 180.845 kb on + strandat 180.857 kb on + strandat 180.857 kb on + strandat 180.998 kb on - strandat 181.237 kb on + strandat 181.274 kb on - strand, within Rv0153cat 181.597 kb on + strand, within Rv0153c

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 6.5
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178,348 + Rv0151c 0.46 -0.1
178,348 + Rv0151c 0.46 +0.4
178,360 + Rv0151c 0.46 -1.0
178,360 + Rv0151c 0.46 +0.0
178,361 - Rv0151c 0.46 +1.0
178,400 - Rv0151c 0.49 +1.9
178,450 - Rv0151c 0.51 +0.6
178,450 - Rv0151c 0.51 +0.9
178,641 + Rv0151c 0.62 -0.2
178,641 + Rv0151c 0.62 -0.7
178,698 + Rv0151c 0.65 -0.2
178,698 + Rv0151c 0.65 -0.6
178,698 + Rv0151c 0.65 -0.2
178,698 + Rv0151c 0.65 -0.2
178,698 + Rv0151c 0.65 +0.1
178,699 - Rv0151c 0.65 -2.7
178,699 - Rv0151c 0.65 -0.5
178,699 - Rv0151c 0.65 +0.7
178,780 + Rv0151c 0.70 -0.7
178,780 + Rv0151c 0.70 +1.9
178,829 + Rv0151c 0.73 -0.4
178,874 + Rv0151c 0.75 +0.3
178,875 - Rv0151c 0.75 +0.3
178,875 - Rv0151c 0.75 +0.5
179,111 + Rv0151c 0.89 +0.1
179,184 + +0.2
179,185 - +0.1
179,188 + +0.1
179,188 + -0.3
179,189 - +0.2
179,189 - +0.6
179,189 - +1.1
179,189 - +0.3
179,189 - -0.3
179,245 + -0.3
179,246 - +0.5
179,246 - +2.3
179,256 + -0.3
179,256 + +0.0
179,256 + -0.9
179,257 - +1.9
179,257 - -0.0
179,257 - +0.9
179,453 + +0.2
179,472 + +0.7
179,472 + -0.5
179,472 + -1.9
179,551 + Rv0152c 0.15 +0.7
179,611 + Rv0152c 0.19 -0.1
179,612 - Rv0152c 0.19 +0.4
179,612 - Rv0152c 0.19 -2.5
179,860 + Rv0152c 0.34 -0.1
179,860 + Rv0152c 0.34 +2.2
179,861 - Rv0152c 0.34 -0.2
179,861 - Rv0152c 0.34 -0.6
179,861 - Rv0152c 0.34 +0.5
179,873 - Rv0152c 0.35 +1.1
179,878 + Rv0152c 0.35 +0.2
179,878 + Rv0152c 0.35 +1.3
179,893 + Rv0152c 0.36 -0.4
180,010 + Rv0152c 0.44 -0.6
180,010 + Rv0152c 0.44 +0.2
180,010 + Rv0152c 0.44 -0.4
180,011 - Rv0152c 0.44 -0.2
180,011 - Rv0152c 0.44 -0.0
180,011 - Rv0152c 0.44 -0.8
180,013 + Rv0152c 0.44 +0.9
180,014 - Rv0152c 0.44 -0.3
180,029 + Rv0152c 0.45 -0.3
180,030 - Rv0152c 0.45 +0.2
180,030 - Rv0152c 0.45 -0.2
180,030 - Rv0152c 0.45 -0.3
180,030 - Rv0152c 0.45 +2.9
180,049 - Rv0152c 0.46 -0.2
180,053 + Rv0152c 0.47 +0.7
180,054 - Rv0152c 0.47 -0.3
180,091 + Rv0152c 0.49 -1.3
180,091 + Rv0152c 0.49 -0.4
180,102 + Rv0152c 0.50 -0.1
180,102 + Rv0152c 0.50 +0.2
180,102 + Rv0152c 0.50 -0.1
180,103 - Rv0152c 0.50 -0.0
180,103 - Rv0152c 0.50 -0.3
180,182 - Rv0152c 0.55 +1.2
180,193 + Rv0152c 0.55 -0.2
180,193 + Rv0152c 0.55 -0.7
180,209 - Rv0152c 0.56 +0.8
180,236 - Rv0152c 0.58 +0.3
180,236 - Rv0152c 0.58 +0.6
180,236 - Rv0152c 0.58 +0.3
180,236 - Rv0152c 0.58 -1.2
180,453 + Rv0152c 0.72 +0.5
180,454 - Rv0152c 0.72 -0.0
180,454 - Rv0152c 0.72 -0.4
180,454 - Rv0152c 0.72 +0.1
180,454 - Rv0152c 0.72 -0.3
180,454 - Rv0152c 0.72 +1.2
180,536 - Rv0152c 0.77 -0.6
180,564 + Rv0152c 0.79 -0.7
180,585 - Rv0152c 0.80 -0.1
180,621 + Rv0152c 0.83 -0.1
180,621 + Rv0152c 0.83 -0.4
180,769 + -0.8
180,770 - +1.1
180,770 - -1.3
180,806 + -0.1
180,807 - -0.8
180,845 + +0.8
180,857 + -0.3
180,857 + -0.3
180,998 - +1.9
181,237 + -1.0
181,274 - Rv0153c 0.14 -0.4
181,597 + Rv0153c 0.53 -0.7

Or see this region's nucleotide sequence