Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3561

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
4,000,707	-		Rv3560c	0.24	-0.8
4,001,031	-		Rv3560c	0.52	-0.9
4,001,132	-		Rv3560c	0.60	+1.1
4,001,208	-		Rv3560c	0.67	-2.5
4,001,352	-		Rv3560c	0.79	+0.1
4,001,352	-		Rv3560c	0.79	+0.1
4,001,352	-		Rv3560c	0.79	-1.1
4,001,512	-				-0.2
4,001,512	-				-0.2
4,001,512	-				+0.0
4,001,596	+				+0.1
4,001,904	+		Rv3561	0.18	-0.8
4,001,905	-		Rv3561	0.18	-1.5
4,002,273	+		Rv3561	0.42	-0.2
4,002,274	-		Rv3561	0.42	-0.6
4,002,274	-		Rv3561	0.42	-0.3
4,002,309	+		Rv3561	0.44	-1.4
4,002,868	-		Rv3561	0.81	-0.9
4,002,868	-		Rv3561	0.81	-2.1
4,002,868	-		Rv3561	0.81	-0.4