Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3162c

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
3,530,499	-		Rv3161c	0.44	+0.0
3,530,535	+		Rv3161c	0.47	+0.4
3,530,726	-		Rv3161c	0.64	-0.3
3,530,726	-		Rv3161c	0.64	-0.3
3,530,936	+		Rv3161c	0.82	-0.7
3,530,936	+		Rv3161c	0.82	+0.2
3,530,937	-		Rv3161c	0.82	-0.7
3,531,036	-				-0.4
3,531,056	-				-0.4
3,531,080	+				-0.5
3,531,081	-				+0.1
3,531,138	+				+0.1
3,531,239	+				-1.6
3,531,240	-				+0.9
3,531,240	-				-0.7
3,531,240	-				+0.7
3,531,396	-		Rv3162c	0.43	-1.5
3,531,396	-		Rv3162c	0.43	-0.7
3,531,621	+				+0.3
3,531,776	-		Rv3163c	0.11	-1.3
3,531,845	+		Rv3163c	0.16	-0.3
3,531,845	+		Rv3163c	0.16	+1.2
3,532,204	+		Rv3163c	0.44	-0.2
3,532,205	-		Rv3163c	0.44	-0.1
3,532,305	+		Rv3163c	0.52	-0.1
3,532,305	+		Rv3163c	0.52	-1.3
3,532,305	+		Rv3163c	0.52	-0.8
3,532,306	-		Rv3163c	0.52	-0.1
3,532,325	-		Rv3163c	0.54	-0.5