Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3007c

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
3,365,969	+		Rv3007c	0.22	+0.1
3,366,032	+		Rv3007c	0.32	-0.5
3,366,032	+		Rv3007c	0.32	-1.9
3,366,033	-		Rv3007c	0.32	-1.6
3,366,276	+		Rv3007c	0.72	-0.7
3,366,277	-		Rv3007c	0.72	-1.9
3,366,484	-				-0.0
3,366,484	-				-0.3
3,366,666	+				-0.4
3,366,666	+				+0.1
3,366,666	+				+0.2
3,366,667	-				+0.4
3,366,667	-				+0.6
3,366,672	+				-0.0
3,366,673	-				-1.0
3,366,673	-				-0.4
3,366,688	-				-0.3
3,366,688	-				+0.3
3,366,694	-				+1.2
3,366,694	-				+0.6
3,366,719	+		Rv3008	0.12	+1.6
3,366,738	+		Rv3008	0.15	+1.6
3,366,840	+		Rv3008	0.31	-0.6
3,366,841	-		Rv3008	0.32	+0.2
3,366,855	+		Rv3008	0.34	-0.4
3,366,855	+		Rv3008	0.34	-0.0
3,366,856	-		Rv3008	0.34	+1.2
3,367,022	-		Rv3008	0.61	-0.0
3,367,113	-		Rv3008	0.75	-0.2
3,367,152	+		Rv3008	0.81	-2.2
3,367,178	+		Rv3008	0.86	+0.1
3,367,178	+		Rv3008	0.86	-1.8
3,367,179	-		Rv3008	0.86	+0.4
3,367,214	+				+1.0