Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2731

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
3,042,085	+		Rv2729c	0.57	+0.7
3,042,366	+		Rv2729c	0.88	+0.8
3,042,367	-		Rv2729c	0.88	-2.2
3,042,367	-		Rv2729c	0.88	-1.0
3,042,367	-		Rv2729c	0.88	-1.0
3,042,411	+				-0.1
3,042,412	-				-0.2
3,042,475	+				-0.7
3,042,475	+				+0.4
3,042,476	-				-0.1
3,042,516	+				-1.2
3,042,517	-				-2.6
3,042,517	-				-0.9
3,042,529	-				-0.1
3,042,569	-				+1.4
3,042,569	-				+1.7
3,042,630	+		Rv2730	0.18	-1.0
3,042,722	+		Rv2730	0.38	+1.9
3,042,723	-		Rv2730	0.38	-1.3
3,042,723	-		Rv2730	0.38	-0.9
3,042,778	+		Rv2730	0.49	-1.1
3,042,778	+		Rv2730	0.49	+0.1
3,042,779	-		Rv2730	0.50	-0.5
3,042,781	+		Rv2730	0.50	-0.7
3,042,818	-		Rv2730	0.58	-0.4
3,042,818	-		Rv2730	0.58	-0.9
3,042,865	-		Rv2730	0.68	-0.8
3,042,897	+		Rv2730	0.74	-0.1
3,042,898	-		Rv2730	0.75	-0.3
3,042,909	+		Rv2730	0.77	+1.0
3,042,910	-		Rv2730	0.77	-0.6
3,042,992	-				-1.6
3,043,012	+				-1.0
3,043,012	+				-0.7
3,043,012	+				-1.3
3,043,012	+				+1.1
3,043,013	-				-0.7
3,043,013	-				-0.4
3,043,013	-				-0.5
3,043,013	-				-0.3
3,043,013	-				+1.7
3,043,541	+		Rv2731	0.38	-2.0
3,043,541	+		Rv2731	0.38	-1.7
3,043,647	-		Rv2731	0.46	-0.0
3,043,689	+		Rv2731	0.49	-1.8
3,043,689	+		Rv2731	0.49	-1.2
3,043,689	+		Rv2731	0.49	-1.0
3,043,706	+		Rv2731	0.50	-0.3
3,044,621	+		Rv2732c	0.40	-0.9