Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1908c

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
2,152,903	+				+0.2
2,152,903	+				-0.3
2,152,903	+				+0.7
2,152,904	-				+0.8
2,152,909	-				-0.1
2,152,994	+				-0.6
2,152,994	+				-1.7
2,153,125	+				-0.7
2,153,386	+		Rv1907c	0.23	-0.3
2,153,387	-		Rv1907c	0.23	-0.9
2,153,408	+		Rv1907c	0.27	-0.5
2,153,409	-		Rv1907c	0.27	+0.7
2,153,619	+		Rv1907c	0.59	-1.0
2,153,665	+		Rv1907c	0.66	+1.3
2,153,665	+		Rv1907c	0.66	+0.8
2,153,666	-		Rv1907c	0.67	-0.3
2,153,981	-				+1.1
2,154,289	+		Rv1908c	0.18	-1.1
2,154,835	+		Rv1908c	0.43	-0.4
2,155,476	-		Rv1908c	0.71	-0.5
2,155,476	-		Rv1908c	0.71	-1.0
2,155,819	+		Rv1908c	0.87	-1.8
2,156,037	-				+0.3
2,156,088	-				-0.7
2,156,195	-		Rv1909c	0.10	-0.4
2,156,204	+		Rv1909c	0.12	-0.3
2,156,205	-		Rv1909c	0.13	+0.0
2,156,205	-		Rv1909c	0.13	-1.5
2,156,205	-		Rv1909c	0.13	-1.0
2,156,205	-		Rv1909c	0.13	-2.2
2,156,423	+		Rv1909c	0.62	-1.1
2,156,440	+		Rv1909c	0.66	+0.1
2,156,584	-				+0.0
2,156,595	+				+0.5
2,156,596	-				+0.4
2,156,602	+				+0.2
2,156,602	+				-0.3
2,156,602	+				+0.6
2,156,602	+				-0.5
2,156,602	+				+0.5
2,156,603	-				-0.6
2,156,603	-				-0.4
2,156,603	-				-0.5
2,156,603	-				-0.0
2,156,603	-				+0.7
2,156,716	+				-0.1
2,156,716	+				+2.5
2,156,716	+				+2.7
2,156,717	-				-1.2
2,156,876	-		Rv1910c	0.29	-0.6
2,156,983	+		Rv1910c	0.47	+1.1
2,156,983	+		Rv1910c	0.47	-0.9
2,156,984	-		Rv1910c	0.47	+1.1
2,157,063	-		Rv1910c	0.60	+0.8
2,157,082	+		Rv1910c	0.63	-0.6
2,157,082	+		Rv1910c	0.63	-0.1
2,157,082	+		Rv1910c	0.63	+0.3