Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1074c

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
1,197,304	-				+0.0
1,197,304	-				+0.2
1,197,306	+				-0.2
1,197,306	+				+2.1
1,197,307	-				-0.6
1,197,371	+		Rv1073	0.16	+1.6
1,197,527	-		Rv1073	0.35	-0.3
1,197,527	-		Rv1073	0.35	+0.6
1,197,527	-		Rv1073	0.35	+0.0
1,197,572	+		Rv1073	0.40	+1.6
1,197,584	+		Rv1073	0.41	-0.6
1,197,584	+		Rv1073	0.41	+0.2
1,197,584	+		Rv1073	0.41	+1.4
1,197,584	+		Rv1073	0.41	+1.6
1,197,585	-		Rv1073	0.42	+1.0
1,197,585	-		Rv1073	0.42	-0.8
1,197,585	-		Rv1073	0.42	-0.1
1,197,585	-		Rv1073	0.42	+1.6
1,197,616	+		Rv1073	0.45	+1.6
1,197,616	+		Rv1073	0.45	-0.9
1,197,617	-		Rv1073	0.45	-0.6
1,197,680	+		Rv1073	0.53	-1.0
1,197,680	+		Rv1073	0.53	-0.1
1,197,727	+		Rv1073	0.58	+0.1
1,197,728	-		Rv1073	0.58	-0.2
1,197,728	-		Rv1073	0.58	-0.6
1,197,800	-		Rv1073	0.67	+0.2
1,197,864	+		Rv1073	0.74	+0.4
1,197,909	+		Rv1073	0.80	+0.3
1,197,909	+		Rv1073	0.80	-0.0
1,197,972	+		Rv1073	0.87	-0.4
1,197,973	-		Rv1073	0.87	-0.1
1,197,973	-		Rv1073	0.87	+0.7
1,198,235	+				-1.5
1,198,285	-		Rv1074c	0.11	-2.0
1,198,301	-		Rv1074c	0.12	+0.5
1,198,301	-		Rv1074c	0.12	-1.3
1,198,537	+		Rv1074c	0.31	-0.8
1,198,537	+		Rv1074c	0.31	-1.1
1,198,538	-		Rv1074c	0.31	-1.4
1,198,866	+		Rv1074c	0.58	-1.6
1,198,867	-		Rv1074c	0.58	-1.6
1,198,868	+		Rv1074c	0.58	+0.2
1,198,868	+		Rv1074c	0.58	-0.0
1,198,868	+		Rv1074c	0.58	-1.0
1,198,868	+		Rv1074c	0.58	-2.4
1,198,868	+		Rv1074c	0.58	-1.0
1,198,868	+		Rv1074c	0.58	+2.1
1,198,868	+		Rv1074c	0.58	-0.8
1,198,868	+		Rv1074c	0.58	-1.3
1,198,868	+		Rv1074c	0.58	+0.2
1,198,868	+		Rv1074c	0.58	-1.7
1,198,869	-		Rv1074c	0.59	-0.9
1,198,869	-		Rv1074c	0.59	-1.9
1,198,869	-		Rv1074c	0.59	-1.2
1,198,869	-		Rv1074c	0.59	-1.1
1,198,869	-		Rv1074c	0.59	-0.5
1,198,869	-		Rv1074c	0.59	+0.3
1,198,869	-		Rv1074c	0.59	-0.9
1,198,869	-		Rv1074c	0.59	-0.6
1,198,869	-		Rv1074c	0.59	-1.8
1,198,869	-		Rv1074c	0.59	-0.3
1,198,869	-		Rv1074c	0.59	-1.2
1,198,869	-		Rv1074c	0.59	-1.0
1,199,420	+				-0.6
1,199,613	+		Rv1075c	0.20	+0.3
1,199,687	+		Rv1075c	0.28	+0.7
1,199,687	+		Rv1075c	0.28	-0.1
1,199,688	-		Rv1075c	0.28	-0.7
1,199,688	-		Rv1075c	0.28	+0.5
1,199,688	-		Rv1075c	0.28	-0.4
1,199,688	-		Rv1075c	0.28	-0.0
1,199,868	-		Rv1075c	0.47	+0.3
1,199,919	-		Rv1075c	0.52	+0.3
1,199,919	-		Rv1075c	0.52	+0.1
1,200,210	+		Rv1075c	0.83	+0.1
1,200,210	+		Rv1075c	0.83	-0.0
1,200,210	+		Rv1075c	0.83	+0.3
1,200,211	-		Rv1075c	0.83	+0.4
1,200,212	+		Rv1075c	0.83	-1.8
1,200,212	+		Rv1075c	0.83	-0.6
1,200,254	+		Rv1075c	0.88	+0.5
1,200,306	+				+0.0