Experiment: 7H9 with nitrite 1.5 mM; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0176 and Rv0177 overlap by 4 nucleotides Rv0177 and Rv0178 overlap by 34 nucleotides Rv0178 and Rv0179c are separated by 30 nucleotides
Rv0176: Rv0176 - Probable conserved Mce associated transmembrane protein, at 207,452 to 208,420
Rv0176
Rv0177: Rv0177 - Probable conserved Mce associated protein, at 208,417 to 208,971
Rv0177
Rv0178: Rv0178 - Probable conserved Mce associated membrane protein, at 208,938 to 209,672
Rv0178
Rv0179c: Rv0179c - Possible lipoprotein LprO, at 209,703 to 210,812
Rv0179c
Position (kb) 208
209
210 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 208.010 kb on + strand, within Rv0176 at 208.010 kb on + strand, within Rv0176 at 208.092 kb on - strand, within Rv0176 at 208.152 kb on - strand, within Rv0176 at 208.208 kb on - strand, within Rv0176 at 208.295 kb on - strand, within Rv0176 at 208.295 kb on - strand, within Rv0176 at 208.314 kb on - strand, within Rv0176 at 208.315 kb on + strand, within Rv0176 at 208.316 kb on - strand, within Rv0176 at 208.726 kb on + strand, within Rv0177 at 208.827 kb on + strand, within Rv0177 at 208.828 kb on - strand, within Rv0177 at 209.247 kb on + strand, within Rv0178 at 209.460 kb on - strand, within Rv0178 at 209.521 kb on - strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.574 kb on + strand, within Rv0178 at 209.604 kb on + strand at 209.605 kb on - strand at 209.670 kb on + strand at 209.670 kb on + strand at 209.705 kb on - strand at 209.914 kb on + strand, within Rv0179c at 209.915 kb on - strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.935 kb on + strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 209.936 kb on - strand, within Rv0179c at 210.025 kb on - strand, within Rv0179c at 210.025 kb on - strand, within Rv0179c at 210.103 kb on + strand, within Rv0179c at 210.103 kb on + strand, within Rv0179c at 210.133 kb on + strand, within Rv0179c at 210.278 kb on - strand, within Rv0179c at 210.278 kb on - strand, within Rv0179c at 210.380 kb on + strand, within Rv0179c at 210.381 kb on - strand, within Rv0179c at 210.395 kb on + strand, within Rv0179c at 210.498 kb on + strand, within Rv0179c at 210.499 kb on - strand, within Rv0179c at 210.565 kb on + strand, within Rv0179c at 210.596 kb on + strand, within Rv0179c at 210.596 kb on + strand, within Rv0179c at 210.620 kb on - strand, within Rv0179c at 210.620 kb on - strand, within Rv0179c at 210.628 kb on + strand, within Rv0179c at 210.629 kb on - strand, within Rv0179c
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrite 1.5 mM; pH 5.5 remove 208,010 + Rv0176 0.58 -0.7 208,010 + Rv0176 0.58 -2.1 208,092 - Rv0176 0.66 -0.9 208,152 - Rv0176 0.72 +0.1 208,208 - Rv0176 0.78 -1.0 208,295 - Rv0176 0.87 -1.2 208,295 - Rv0176 0.87 -0.5 208,314 - Rv0176 0.89 -0.4 208,315 + Rv0176 0.89 +0.5 208,316 - Rv0176 0.89 -0.8 208,726 + Rv0177 0.56 -0.8 208,827 + Rv0177 0.74 +0.6 208,828 - Rv0177 0.74 +0.0 209,247 + Rv0178 0.42 -1.0 209,460 - Rv0178 0.71 -1.0 209,521 - Rv0178 0.79 -0.3 209,574 + Rv0178 0.87 +0.0 209,574 + Rv0178 0.87 -0.8 209,574 + Rv0178 0.87 -0.9 209,574 + Rv0178 0.87 +0.8 209,574 + Rv0178 0.87 -1.2 209,604 + +0.5 209,605 - -1.8 209,670 + +1.4 209,670 + -0.3 209,705 - +0.9 209,914 + Rv0179c 0.19 -0.2 209,915 - Rv0179c 0.19 +1.0 209,935 + Rv0179c 0.21 +0.1 209,935 + Rv0179c 0.21 +0.7 209,935 + Rv0179c 0.21 -0.0 209,935 + Rv0179c 0.21 +0.1 209,935 + Rv0179c 0.21 +0.2 209,936 - Rv0179c 0.21 +1.6 209,936 - Rv0179c 0.21 +0.0 209,936 - Rv0179c 0.21 +1.3 209,936 - Rv0179c 0.21 -0.0 209,936 - Rv0179c 0.21 -0.1 210,025 - Rv0179c 0.29 +0.3 210,025 - Rv0179c 0.29 +0.7 210,103 + Rv0179c 0.36 -0.5 210,103 + Rv0179c 0.36 +1.4 210,133 + Rv0179c 0.39 +3.0 210,278 - Rv0179c 0.52 -0.3 210,278 - Rv0179c 0.52 +1.8 210,380 + Rv0179c 0.61 +2.9 210,381 - Rv0179c 0.61 -0.2 210,395 + Rv0179c 0.62 -0.2 210,498 + Rv0179c 0.72 -0.4 210,499 - Rv0179c 0.72 +0.4 210,565 + Rv0179c 0.78 +1.8 210,596 + Rv0179c 0.80 -0.2 210,596 + Rv0179c 0.80 +0.9 210,620 - Rv0179c 0.83 +0.7 210,620 - Rv0179c 0.83 -0.2 210,628 + Rv0179c 0.83 -0.2 210,629 - Rv0179c 0.83 -0.5
Or see this region's nucleotide sequence