Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2912c

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
3,218,669	+		Rv2911	0.38	+0.1
3,218,670	-		Rv2911	0.38	+0.2
3,218,796	+		Rv2911	0.52	-0.0
3,218,797	-		Rv2911	0.52	-1.2
3,218,797	-		Rv2911	0.52	-0.3
3,218,797	-		Rv2911	0.52	+0.2
3,219,035	+		Rv2911	0.79	-0.1
3,219,140	+				+2.7
3,219,140	+				+1.7
3,219,212	+				-0.3
3,219,212	+				+0.1
3,219,213	-				-0.6
3,219,213	-				-0.4
3,219,277	+				-1.5
3,219,277	+				+0.2
3,219,277	+				-1.0
3,219,278	-				+0.1
3,219,531	+		Rv2912c	0.44	-1.7
3,219,671	+		Rv2912c	0.68	-0.3
3,219,672	-		Rv2912c	0.68	+0.1
3,219,672	-		Rv2912c	0.68	-0.7
3,219,672	-		Rv2912c	0.68	-3.0
3,219,978	-				+0.5
3,220,050	+		Rv2913c	0.10	-0.3
3,220,051	-		Rv2913c	0.10	-0.1
3,220,051	-		Rv2913c	0.10	+0.0
3,220,051	-		Rv2913c	0.10	-0.5
3,220,051	-		Rv2913c	0.10	+0.7
3,220,051	-		Rv2913c	0.10	-1.7
3,220,053	+		Rv2913c	0.10	-0.1
3,220,094	+		Rv2913c	0.13	+1.3
3,220,158	-		Rv2913c	0.16	+0.5
3,220,195	-		Rv2913c	0.18	+0.7
3,220,707	+		Rv2913c	0.46	+0.1