Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1835c

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
2,079,790	+				-2.4
2,080,281	+		Rv1834	0.52	+0.2
2,080,282	-		Rv1834	0.52	-0.3
2,080,282	-		Rv1834	0.52	-0.4
2,080,457	+		Rv1834	0.72	-0.2
2,080,458	-		Rv1834	0.72	+2.7
2,080,458	-		Rv1834	0.72	+1.0
2,080,661	+				-0.3
2,080,662	-				-1.1
2,080,710	+				-0.2
2,080,710	+				-0.4
2,080,711	-				+0.1
2,080,711	-				-0.3
2,080,753	+				+0.3
2,080,852	+				-0.1
2,080,853	-				-0.3
2,080,853	-				+0.7
2,080,902	+		Rv1835c	0.11	-0.6
2,080,995	+		Rv1835c	0.16	+1.0
2,080,995	+		Rv1835c	0.16	-0.4
2,080,996	-		Rv1835c	0.16	+0.4
2,080,996	-		Rv1835c	0.16	-0.4
2,080,996	-		Rv1835c	0.16	-0.6
2,081,014	+		Rv1835c	0.17	-0.1
2,081,015	-		Rv1835c	0.17	+0.0
2,081,015	-		Rv1835c	0.17	+0.1
2,081,051	-		Rv1835c	0.19	+0.1
2,081,088	-		Rv1835c	0.21	+0.1
2,081,088	-		Rv1835c	0.21	+0.7
2,081,147	+		Rv1835c	0.24	+0.1
2,081,148	-		Rv1835c	0.24	-0.4
2,081,149	+		Rv1835c	0.24	+0.8
2,081,150	-		Rv1835c	0.24	-0.1
2,081,150	-		Rv1835c	0.24	-0.1
2,081,150	-		Rv1835c	0.24	-0.2
2,081,266	+		Rv1835c	0.30	-0.6
2,081,266	+		Rv1835c	0.30	-0.0
2,081,266	+		Rv1835c	0.30	+0.8
2,081,267	-		Rv1835c	0.30	-0.2
2,081,330	-		Rv1835c	0.33	+0.3
2,081,332	+		Rv1835c	0.33	-0.9
2,081,332	+		Rv1835c	0.33	-0.0
2,081,332	+		Rv1835c	0.33	-0.5
2,081,333	-		Rv1835c	0.33	-0.0
2,081,333	-		Rv1835c	0.33	+0.1
2,081,333	-		Rv1835c	0.33	+0.2
2,081,333	-		Rv1835c	0.33	-3.0
2,081,402	-		Rv1835c	0.37	+0.3
2,081,614	+		Rv1835c	0.48	+0.3
2,081,615	-		Rv1835c	0.48	+1.7
2,081,639	-		Rv1835c	0.50	+0.3
2,081,639	-		Rv1835c	0.50	+1.7
2,081,639	-		Rv1835c	0.50	-2.5
2,081,680	+		Rv1835c	0.52	-1.0
2,081,726	+		Rv1835c	0.54	-0.0
2,081,726	+		Rv1835c	0.54	+0.6
2,081,726	+		Rv1835c	0.54	-0.2
2,081,765	-		Rv1835c	0.56	+0.1
2,081,781	+		Rv1835c	0.57	-0.3
2,081,781	+		Rv1835c	0.57	-0.9
2,081,781	+		Rv1835c	0.57	-0.1
2,081,828	-		Rv1835c	0.60	-0.3
2,081,828	-		Rv1835c	0.60	-0.4
2,081,969	-		Rv1835c	0.67	-0.3
2,081,969	-		Rv1835c	0.67	-1.4
2,082,031	+		Rv1835c	0.70	+0.2
2,082,032	-		Rv1835c	0.71	+0.7
2,082,096	+		Rv1835c	0.74	+0.0
2,082,118	+		Rv1835c	0.75	-0.2
2,082,311	+		Rv1835c	0.85	+0.3
2,082,386	-		Rv1835c	0.89	-0.1
2,082,388	+		Rv1835c	0.89	-0.7
2,082,490	+				-0.3
2,082,490	+				+1.0
2,082,490	+				+0.1
2,082,491	-				+3.7
2,082,502	+				-0.4
2,082,502	+				-0.6
2,082,553	+				-0.6
2,082,937	+		Rv1836c	0.16	+0.3
2,083,355	-		Rv1836c	0.37	+0.1