Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0872c

Experiment: 7H9 with nitrite 1.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 1.5 mM; pH 5.5
967,431	+		Rv0870c	0.22	+0.4
967,673	-		Rv0870c	0.84	+0.1
967,673	-		Rv0870c	0.84	-2.5
967,713	-				+0.5
967,748	+				-1.1
967,773	+				-0.3
967,774	-				+0.5
967,806	+				-1.1
967,807	-				+0.4
967,923	-				-0.2
967,923	-				+0.1
967,977	-		Rv0871	0.19	+2.1
967,977	-		Rv0871	0.19	+0.6
969,261	+		Rv0872c	0.46	-1.1
969,262	-		Rv0872c	0.46	-1.6
969,453	+		Rv0872c	0.57	-0.0
969,453	+		Rv0872c	0.57	+0.2
969,623	+		Rv0872c	0.66	+1.4
969,623	+		Rv0872c	0.66	-0.3
969,682	+		Rv0872c	0.69	+0.1
969,683	-		Rv0872c	0.69	-1.2
969,683	-		Rv0872c	0.69	-0.4
969,684	+		Rv0872c	0.69	-0.8
969,829	+		Rv0872c	0.77	+0.9
969,830	-		Rv0872c	0.77	-0.5
969,985	+		Rv0872c	0.86	+2.0
969,985	+		Rv0872c	0.86	-1.1
969,986	-		Rv0872c	0.86	-0.3
969,986	-		Rv0872c	0.86	-1.0
970,017	-		Rv0872c	0.87	-0.0
970,060	+		Rv0872c	0.90	-0.4
970,060	+		Rv0872c	0.90	-1.0
970,061	-		Rv0872c	0.90	-0.4
970,061	-		Rv0872c	0.90	-0.5
970,234	-				-0.6
970,234	-				-0.7
970,237	+				+0.0
970,237	+				+1.1
970,237	+				-0.3
970,237	+				+0.1
970,237	+				-0.6
970,237	+				+0.1
970,238	-				-0.3
970,238	-				-0.5
970,238	-				+0.1
970,238	-				-0.7
970,238	-				-1.4
970,238	-				-0.4
970,286	-				-0.6
970,288	+				-0.6
970,327	-				-0.3
970,443	+				+0.7
970,443	+				+0.4
970,443	+				-0.2
970,444	-				-0.2
970,444	-				-0.3
970,447	-				+0.7
970,458	+				-0.4
970,458	+				+0.1
970,458	+				+0.6
970,458	+				-0.7
970,458	+				-0.3
970,458	+				+0.6
970,458	+				-0.7
970,459	-				-0.0
970,459	-				-0.0
970,462	+				-0.7
970,462	+				-0.2
970,463	-				-0.7
970,468	+				+0.5
970,468	+				-0.4
970,469	-				+1.0
970,632	+				-0.6
970,632	+				+0.2
970,632	+				-0.4
970,632	+				-0.0
970,633	-				+1.0
970,633	-				-1.4
970,633	-				+0.4
970,760	+		Rv0873	0.13	-0.1
970,761	-		Rv0873	0.13	-1.4
970,844	+		Rv0873	0.17	-1.2
970,845	-		Rv0873	0.17	-0.4
970,845	-		Rv0873	0.17	-0.8
970,924	-		Rv0873	0.21	-1.2
970,974	+		Rv0873	0.24	-0.5
971,010	+		Rv0873	0.26	-0.3
971,011	-		Rv0873	0.26	+0.8
971,011	-		Rv0873	0.26	+0.1
971,011	-		Rv0873	0.26	-0.3
971,087	+		Rv0873	0.30	+4.5
971,130	+		Rv0873	0.32	-0.1
971,143	-		Rv0873	0.33	-0.5
971,161	-		Rv0873	0.34	+0.2