Experiment: 7H9 with nitrite 1.5 mM; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0849 and Rv0850 overlap by 4 nucleotides Rv0850 and Rv0851c overlap by 4 nucleotides Rv0851c and Rv0852 are separated by 90 nucleotides Rv0852 and Rv0853c are separated by 40 nucleotides
Rv0849: Rv0849 - Probable conserved integral membrane transport protein, at 946,056 to 947,315
Rv0849
Rv0850: Rv0850 - Putative transposase (fragment), at 947,312 to 947,644
Rv0850
Rv0851c: Rv0851c - Probable short-chain type dehydrogenase/reductase, at 947,641 to 948,468
Rv0851c
Rv0852: Rv0852 - Possible fatty-acid-CoA ligase FadD16 (fatty-acid-CoA synthetase) (fatty-acid-CoA synthase), at 948,559 to 949,395
Rv0852
Rv0853c: Rv0853c - Probable pyruvate or indole-3-pyruvate decarboxylase Pdc, at 949,436 to 951,118
Rv0853c
Position (kb) 947
948
949 Strain fitness (log2 ratio) -1
0
1
2 at 946.725 kb on + strand, within Rv0849 at 946.746 kb on + strand, within Rv0849 at 946.794 kb on + strand, within Rv0849 at 946.795 kb on - strand, within Rv0849 at 947.109 kb on + strand, within Rv0849 at 947.109 kb on + strand, within Rv0849 at 947.392 kb on - strand, within Rv0850 at 947.742 kb on - strand, within Rv0851c at 947.742 kb on - strand, within Rv0851c at 948.481 kb on + strand at 948.575 kb on - strand at 948.819 kb on + strand, within Rv0852 at 948.935 kb on + strand, within Rv0852 at 949.068 kb on + strand, within Rv0852 at 949.068 kb on + strand, within Rv0852 at 949.336 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrite 1.5 mM; pH 5.5 remove 946,725 + Rv0849 0.53 -0.9 946,746 + Rv0849 0.55 -0.6 946,794 + Rv0849 0.59 +1.0 946,795 - Rv0849 0.59 -1.1 947,109 + Rv0849 0.84 -0.0 947,109 + Rv0849 0.84 +1.2 947,392 - Rv0850 0.24 -0.1 947,742 - Rv0851c 0.12 +2.1 947,742 - Rv0851c 0.12 -0.0 948,481 + -0.4 948,575 - -0.3 948,819 + Rv0852 0.31 -0.3 948,935 + Rv0852 0.45 -0.6 949,068 + Rv0852 0.61 -0.8 949,068 + Rv0852 0.61 -0.3 949,336 + -0.5
Or see this region's nucleotide sequence