Experiment: 7H9 with nitrite 1.5 mM; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0197 and Rv0198c overlap by 4 nucleotides Rv0198c and Rv0199 are separated by 42 nucleotides Rv0199 and Rv0200 overlap by 4 nucleotides
Rv0197: Rv0197 - Possible oxidoreductase, at 232,231 to 234,519
Rv0197
Rv0198c: Rv0198c - Probable zinc metalloprotease Zmp1, at 234,516 to 236,507
Rv0198c
Rv0199: Rv0199 - Probable conserved membrane protein, at 236,550 to 237,209
Rv0199
Rv0200: Rv0200 - Possible conserved transmembrane protein, at 237,206 to 237,895
Rv0200
Position (kb) 234
235
236
237 Strain fitness (log2 ratio) -2
-1
0
1 at 233.643 kb on - strand, within Rv0197 at 233.701 kb on + strand, within Rv0197 at 233.762 kb on - strand, within Rv0197 at 233.770 kb on + strand, within Rv0197 at 234.110 kb on - strand, within Rv0197 at 234.326 kb on - strand at 234.589 kb on + strand at 234.590 kb on - strand at 234.991 kb on + strand, within Rv0198c at 235.145 kb on - strand, within Rv0198c at 235.145 kb on - strand, within Rv0198c at 235.212 kb on + strand, within Rv0198c at 235.213 kb on - strand, within Rv0198c at 235.259 kb on - strand, within Rv0198c at 235.473 kb on + strand, within Rv0198c at 235.473 kb on + strand, within Rv0198c at 235.477 kb on + strand, within Rv0198c at 235.477 kb on + strand, within Rv0198c at 235.989 kb on + strand, within Rv0198c at 236.021 kb on - strand, within Rv0198c at 236.068 kb on + strand, within Rv0198c at 236.069 kb on - strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.101 kb on + strand, within Rv0198c at 236.394 kb on + strand at 236.394 kb on + strand at 236.674 kb on - strand, within Rv0199 at 236.693 kb on - strand, within Rv0199 at 236.772 kb on - strand, within Rv0199 at 236.775 kb on + strand, within Rv0199 at 236.775 kb on + strand, within Rv0199 at 236.988 kb on - strand, within Rv0199
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrite 1.5 mM; pH 5.5 remove 233,643 - Rv0197 0.62 +0.0 233,701 + Rv0197 0.64 -2.2 233,762 - Rv0197 0.67 -0.5 233,770 + Rv0197 0.67 +0.6 234,110 - Rv0197 0.82 -0.3 234,326 - -0.0 234,589 + -2.4 234,590 - -0.8 234,991 + Rv0198c 0.24 -1.1 235,145 - Rv0198c 0.32 +1.7 235,145 - Rv0198c 0.32 -0.6 235,212 + Rv0198c 0.35 -1.7 235,213 - Rv0198c 0.35 -1.1 235,259 - Rv0198c 0.37 +0.2 235,473 + Rv0198c 0.48 -0.5 235,473 + Rv0198c 0.48 -2.6 235,477 + Rv0198c 0.48 -1.5 235,477 + Rv0198c 0.48 +0.7 235,989 + Rv0198c 0.74 -0.3 236,021 - Rv0198c 0.76 -0.7 236,068 + Rv0198c 0.78 -0.2 236,069 - Rv0198c 0.78 -0.7 236,101 + Rv0198c 0.80 +1.0 236,101 + Rv0198c 0.80 -0.2 236,101 + Rv0198c 0.80 -2.5 236,394 + -0.3 236,394 + -0.5 236,674 - Rv0199 0.19 +0.2 236,693 - Rv0199 0.22 -1.1 236,772 - Rv0199 0.34 -1.9 236,775 + Rv0199 0.34 -0.2 236,775 + Rv0199 0.34 -1.4 236,988 - Rv0199 0.66 -0.3
Or see this region's nucleotide sequence