Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3918c

Experiment: 7H9 with nitrite 3 mM; pH 5.5

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRv3917c and Rv3918c overlap by 4 nucleotidesRv3918c and Rv3919c overlap by 4 nucleotidesRv3919c and Rv3920c are separated by 131 nucleotides Rv3917c: Rv3917c - Probable chromosome partitioning protein ParB, at 4,405,457 to 4,406,491 Rv3917c Rv3918c: Rv3918c - Probable chromosome partitioning protein ParA, at 4,406,488 to 4,407,531 Rv3918c Rv3919c: Rv3919c - Probable glucose-inhibited division protein B Gid, at 4,407,528 to 4,408,202 Rv3919c Rv3920c: Rv3920c - Conserved protein similar to jag protein, at 4,408,334 to 4,408,897 Rv3920c Position (kb) 4406 4407 4408Strain fitness (log2 ratio) -1 0 1at 4408.056 kb on + strand, within Rv3919cat 4408.071 kb on + strand, within Rv3919cat 4408.072 kb on - strand, within Rv3919cat 4408.077 kb on - strand, within Rv3919cat 4408.203 kb on + strandat 4408.203 kb on + strandat 4408.203 kb on + strandat 4408.204 kb on - strandat 4408.299 kb on + strandat 4408.300 kb on - strandat 4408.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 7H9 with nitrite 3 mM; pH 5.5
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4,408,056 + Rv3919c 0.78 +1.6
4,408,071 + Rv3919c 0.80 +0.1
4,408,072 - Rv3919c 0.81 +0.1
4,408,077 - Rv3919c 0.81 -1.3
4,408,203 + -0.5
4,408,203 + +0.1
4,408,203 + -1.1
4,408,204 - -0.8
4,408,299 + -0.7
4,408,300 - +0.1
4,408,336 - -1.7

Or see this region's nucleotide sequence