Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3837c

Experiment: 7H9 with nitrite 3 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 3 mM; pH 5.5
4,310,201	+		Rv3835	0.85	-0.6
4,310,394	+				-0.3
4,310,504	+		Rv3836	0.25	+0.0
4,310,505	-		Rv3836	0.25	-0.7
4,310,549	-		Rv3836	0.36	-0.2
4,310,584	+		Rv3836	0.44	-0.4
4,310,618	-		Rv3836	0.52	-0.9
4,310,799	+				+0.2
4,310,799	+				+2.1
4,310,799	+				-0.3
4,310,800	-				-1.3
4,310,936	+				-0.9
4,310,948	-				+0.0
4,310,948	-				+0.6
4,311,320	-		Rv3837c	0.44	-0.1
4,311,320	-		Rv3837c	0.44	+0.5
4,311,394	+		Rv3837c	0.55	-0.1
4,311,395	-		Rv3837c	0.55	+1.0
4,311,395	-		Rv3837c	0.55	-1.1
4,311,395	-		Rv3837c	0.55	-0.3
4,311,395	-		Rv3837c	0.55	+0.6
4,311,395	-		Rv3837c	0.55	+5.4
4,311,395	-		Rv3837c	0.55	-0.9
4,311,450	+		Rv3837c	0.63	-0.4
4,311,450	+		Rv3837c	0.63	-0.1
4,311,450	+		Rv3837c	0.63	+1.5
4,311,450	+		Rv3837c	0.63	+0.3
4,311,450	+		Rv3837c	0.63	+0.0
4,311,457	-		Rv3837c	0.64	-0.7
4,311,667	+				+0.0
4,311,667	+				+0.2
4,311,667	+				-1.2