Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0755c

Experiment: 7H9 with nitrite 3 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with nitrite 3 mM; pH 5.5
847,150	-		Rv0754	0.56	+1.5
847,234	+		Rv0754	0.61	+0.1
847,308	+		Rv0754	0.65	-0.8
847,308	+		Rv0754	0.65	-0.1
847,308	+		Rv0754	0.65	+0.7
847,309	-		Rv0754	0.66	-0.2
847,309	-		Rv0754	0.66	-0.4
847,409	+		Rv0754	0.71	-0.2
847,431	+		Rv0754	0.72	+0.7
847,431	+		Rv0754	0.72	-0.6
847,491	+		Rv0754	0.76	-0.9
847,491	+		Rv0754	0.76	-0.8
847,491	+		Rv0754	0.76	-0.1
847,598	-		Rv0754	0.82	-0.6
847,725	+		Rv0754	0.89	-0.2
847,725	+		Rv0754	0.89	+0.1
847,869	+				-0.3
847,870	-				-0.3
847,873	+				-0.7
847,873	+				-0.1
847,873	+				+0.5
847,874	-				+0.5
847,874	-				-0.7
847,874	-				+0.1
847,928	+				-0.6
847,928	+				-0.7
847,928	+				-0.1
847,929	-				+0.3
847,929	-				+1.5
847,929	-				+1.5
848,094	+				+0.7
848,095	-				-0.4
848,100	+				+0.5
848,142	-				-0.1
848,820	+		Rv0755c	0.37	+1.5
848,820	+		Rv0755c	0.37	-0.1
848,820	+		Rv0755c	0.37	-0.1
849,074	+		Rv0755c	0.50	+0.4
849,468	-		Rv0755c	0.70	+0.2
849,578	-		Rv0755c	0.76	+0.4
849,619	+		Rv0755c	0.78	+1.1
849,619	+		Rv0755c	0.78	+1.7
849,619	+		Rv0755c	0.78	-1.5
849,620	-		Rv0755c	0.78	+0.3
849,620	-		Rv0755c	0.78	+0.6
849,824	-		Rv0755c	0.89	-0.2
849,966	+				-0.3
849,991	+				-0.0
849,991	+				+0.5
849,992	-				-2.2
850,084	+				+0.4
850,085	-				+0.4
850,088	+				-0.4
850,088	+				-0.3
850,088	+				-2.1
850,089	-				+0.4
850,089	-				-0.1
850,089	-				-0.1
850,115	+				+0.2
850,343	+				-1.5
850,344	-				-0.2
850,344	-				+0.2
850,344	-				-0.3
850,345	+				-0.2
850,345	+				-0.4
850,345	+				+0.1
850,345	+				+0.7
850,346	-				-0.7
850,346	-				-0.5
850,346	-				-0.3
850,346	-				-0.4
850,346	-				-0.1
850,346	-				-0.6
850,346	-				-0.3
850,346	-				+0.1
850,346	-				+0.0
850,369	+		Rv0755A	0.15	+0.5
850,369	+		Rv0755A	0.15	+0.3
850,369	+		Rv0755A	0.15	+0.0
850,395	-		Rv0755A	0.28	+0.3
850,410	+		Rv0755A	0.37	+1.2
850,410	+		Rv0755A	0.37	-0.7
850,410	+		Rv0755A	0.37	+0.7
850,411	-		Rv0755A	0.37	-0.5
850,497	-		Rv0755A	0.83	-1.1
850,625	+				-0.2
850,628	+				+0.5
850,628	+				-0.4
850,628	+				-0.5
850,629	-				-0.5
850,629	-				+1.1
850,629	-				-0.3
850,860	+		Rv0756c	0.16	-0.8
850,860	+		Rv0756c	0.16	+0.2
850,861	-		Rv0756c	0.17	-0.6
850,985	-		Rv0756c	0.34	-0.7