Experiment: 7H9 with nitrite 3 mM; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0449c and Rv0450c are separated by 39 nucleotides Rv0450c and Rv0451c overlap by 4 nucleotides Rv0451c and Rv0452 are separated by 231 nucleotides
Rv0449c: Rv0449c - Conserved hypothetical protein, at 537,229 to 538,548
Rv0449c
Rv0450c: Rv0450c - Probable conserved transmembrane transport protein MmpL4, at 538,588 to 541,491
Rv0450c
Rv0451c: Rv0451c - Probable conserved membrane protein MmpS4, at 541,488 to 541,910
Rv0451c
Rv0452: Rv0452 - Possible transcriptional regulatory protein, at 542,142 to 542,852
Rv0452
Position (kb) 538
539
540
541
542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.866 kb on + strand, within Rv0449c at 537.867 kb on - strand, within Rv0449c at 537.953 kb on + strand, within Rv0449c at 537.954 kb on - strand, within Rv0449c at 538.037 kb on + strand, within Rv0449c at 538.038 kb on - strand, within Rv0449c at 538.170 kb on - strand, within Rv0449c at 538.170 kb on - strand, within Rv0449c at 538.230 kb on - strand, within Rv0449c at 538.230 kb on - strand, within Rv0449c at 538.325 kb on + strand, within Rv0449c at 538.326 kb on - strand, within Rv0449c at 538.407 kb on - strand, within Rv0449c at 538.407 kb on - strand, within Rv0449c at 538.448 kb on + strand at 538.449 kb on - strand at 538.449 kb on - strand at 538.481 kb on + strand at 538.481 kb on + strand at 538.481 kb on + strand at 538.555 kb on + strand at 538.712 kb on - strand at 538.921 kb on + strand, within Rv0450c at 538.922 kb on - strand, within Rv0450c at 539.475 kb on + strand, within Rv0450c at 539.859 kb on + strand, within Rv0450c at 539.862 kb on + strand, within Rv0450c at 539.887 kb on - strand, within Rv0450c at 540.244 kb on + strand, within Rv0450c at 540.264 kb on - strand, within Rv0450c at 540.264 kb on - strand, within Rv0450c at 540.396 kb on + strand, within Rv0450c at 540.430 kb on + strand, within Rv0450c at 540.430 kb on + strand, within Rv0450c at 540.431 kb on - strand, within Rv0450c at 540.472 kb on + strand, within Rv0450c at 540.473 kb on - strand, within Rv0450c at 540.513 kb on - strand, within Rv0450c at 540.597 kb on - strand, within Rv0450c at 540.605 kb on + strand, within Rv0450c at 540.605 kb on + strand, within Rv0450c at 540.606 kb on - strand, within Rv0450c at 540.609 kb on - strand, within Rv0450c at 540.674 kb on + strand, within Rv0450c at 540.675 kb on - strand, within Rv0450c at 540.748 kb on - strand, within Rv0450c at 540.900 kb on + strand, within Rv0450c at 541.510 kb on + strand at 541.644 kb on - strand, within Rv0451c at 541.801 kb on + strand, within Rv0451c at 541.905 kb on + strand at 541.906 kb on - strand at 541.906 kb on - strand at 541.906 kb on - strand at 541.995 kb on + strand at 541.995 kb on + strand at 542.009 kb on + strand at 542.038 kb on - strand at 542.038 kb on - strand at 542.059 kb on + strand at 542.059 kb on + strand at 542.060 kb on - strand at 542.079 kb on - strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.107 kb on + strand at 542.108 kb on - strand at 542.399 kb on - strand, within Rv0452
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with nitrite 3 mM; pH 5.5 remove 537,866 + Rv0449c 0.48 -0.5 537,866 + Rv0449c 0.48 -1.2 537,866 + Rv0449c 0.48 -1.7 537,866 + Rv0449c 0.48 -1.4 537,866 + Rv0449c 0.48 -0.2 537,867 - Rv0449c 0.48 +0.6 537,953 + Rv0449c 0.55 -0.5 537,954 - Rv0449c 0.55 -0.1 538,037 + Rv0449c 0.61 -0.7 538,038 - Rv0449c 0.61 -1.3 538,170 - Rv0449c 0.71 -0.4 538,170 - Rv0449c 0.71 -0.2 538,230 - Rv0449c 0.76 +0.0 538,230 - Rv0449c 0.76 -0.1 538,325 + Rv0449c 0.83 -0.6 538,326 - Rv0449c 0.83 +0.2 538,407 - Rv0449c 0.89 -0.9 538,407 - Rv0449c 0.89 -0.1 538,448 + +0.6 538,449 - -2.7 538,449 - -0.1 538,481 + +1.9 538,481 + -0.7 538,481 + -0.1 538,555 + -0.2 538,712 - -0.3 538,921 + Rv0450c 0.11 +1.3 538,922 - Rv0450c 0.12 +0.0 539,475 + Rv0450c 0.31 +0.2 539,859 + Rv0450c 0.44 +0.2 539,862 + Rv0450c 0.44 +1.6 539,887 - Rv0450c 0.45 -0.0 540,244 + Rv0450c 0.57 -0.6 540,264 - Rv0450c 0.58 +1.7 540,264 - Rv0450c 0.58 -1.1 540,396 + Rv0450c 0.62 +2.0 540,430 + Rv0450c 0.63 +1.6 540,430 + Rv0450c 0.63 +0.4 540,431 - Rv0450c 0.63 +0.3 540,472 + Rv0450c 0.65 -0.3 540,473 - Rv0450c 0.65 -0.5 540,513 - Rv0450c 0.66 -0.4 540,597 - Rv0450c 0.69 -0.6 540,605 + Rv0450c 0.69 -0.5 540,605 + Rv0450c 0.69 -0.9 540,606 - Rv0450c 0.69 -0.3 540,609 - Rv0450c 0.70 -0.3 540,674 + Rv0450c 0.72 +0.4 540,675 - Rv0450c 0.72 +0.1 540,748 - Rv0450c 0.74 +1.8 540,900 + Rv0450c 0.80 -0.3 541,510 + -0.8 541,644 - Rv0451c 0.37 -0.1 541,801 + Rv0451c 0.74 -0.6 541,905 + +1.6 541,906 - -0.1 541,906 - -1.2 541,906 - -1.2 541,995 + +0.2 541,995 + +0.4 542,009 + +0.6 542,038 - -0.4 542,038 - +0.6 542,059 + +0.3 542,059 + +0.2 542,060 - -0.3 542,079 - -0.8 542,107 + -0.6 542,107 + -1.4 542,107 + -0.1 542,107 + -1.0 542,107 + -0.2 542,107 + +0.8 542,107 + -0.3 542,108 - -0.5 542,399 - Rv0452 0.36 +0.2
Or see this region's nucleotide sequence