Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3639c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
4,076,946	+				-1.3
4,076,946	+				-0.2
4,076,947	-				-0.6
4,076,947	-				-0.2
4,076,947	-				+0.4
4,076,947	-				-3.4
4,076,947	-				-0.0
4,077,035	+				-0.1
4,077,119	+		Rv3638	0.18	+2.2
4,077,120	-		Rv3638	0.18	+0.4
4,077,120	-		Rv3638	0.18	-0.3
4,077,120	-		Rv3638	0.18	+0.3
4,077,273	+		Rv3638	0.39	+0.1
4,077,306	+		Rv3638	0.43	+0.4
4,077,306	+		Rv3638	0.43	+0.1
4,077,473	+		Rv3638	0.65	+0.7
4,077,473	+		Rv3638	0.65	+0.7
4,077,473	+		Rv3638	0.65	-0.8
4,077,562	+		Rv3638	0.77	-0.7
4,077,588	+		Rv3638	0.81	+0.4
4,077,672	-				-0.2
4,077,790	+				+0.4
4,077,791	-				+1.2
4,077,792	-				+0.6
4,077,939	+				-0.2
4,077,957	+		Rv3639c	0.13	-0.6
4,077,957	+		Rv3639c	0.13	-2.5
4,077,957	+		Rv3639c	0.13	+3.4
4,077,957	+		Rv3639c	0.13	+1.0
4,077,958	-		Rv3639c	0.13	+0.0
4,077,958	-		Rv3639c	0.13	-1.6
4,077,958	-		Rv3639c	0.13	+1.8
4,077,958	-		Rv3639c	0.13	-1.5
4,077,958	-		Rv3639c	0.13	+2.5
4,078,521	+				+1.0
4,078,522	-				-2.0
4,078,583	-				+0.3
4,078,720	+		Rv3640c	0.16	-0.1
4,078,720	+		Rv3640c	0.16	+0.1
4,078,793	+		Rv3640c	0.22	-0.1
4,079,245	-		Rv3640c	0.59	+0.5
4,079,245	-		Rv3640c	0.59	+1.2
4,079,245	-		Rv3640c	0.59	-0.0
4,079,245	-		Rv3640c	0.59	-0.0
4,079,259	+		Rv3640c	0.60	-1.0
4,079,413	+		Rv3640c	0.73	-0.4
4,079,414	-		Rv3640c	0.73	-0.5
4,079,424	+		Rv3640c	0.73	-1.5