Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2189c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
2,451,249	-				+3.8
2,451,256	+				+0.8
2,451,257	-				+0.2
2,451,381	+		Rv2189c	0.17	-1.3
2,451,386	+		Rv2189c	0.18	-0.8
2,451,387	-		Rv2189c	0.18	-1.5
2,451,428	+		Rv2189c	0.23	-0.3
2,452,026	+				+2.8
2,452,027	-				-0.8
2,452,183	-				-1.2
2,452,183	-				+1.0
2,452,183	-				-1.1
2,452,219	-				+1.2
2,452,659	+		Rv2190c	0.47	+1.8
2,452,849	+		Rv2190c	0.63	-0.1
2,452,928	-		Rv2190c	0.70	+0.3
2,452,941	+		Rv2190c	0.71	-2.0
2,452,942	-		Rv2190c	0.71	-1.7
2,452,942	-		Rv2190c	0.71	-1.4
2,452,942	-		Rv2190c	0.71	-0.2
2,452,942	-		Rv2190c	0.71	-1.9