Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1998c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
2,241,992	-		Rv1997	0.67	-0.2
2,242,240	-		Rv1997	0.77	+2.9
2,242,620	-				-1.1
2,242,733	+				+4.2
2,242,733	+				+1.1
2,242,750	+				+0.5
2,242,751	-				-0.2
2,242,798	-				+0.5
2,242,858	-				+0.1
2,243,001	-				-0.3
2,243,063	+		Rv1998c	0.15	-0.5
2,243,161	-		Rv1998c	0.28	-0.2
2,243,507	+		Rv1998c	0.72	+3.0
2,243,757	-				-0.1
2,243,757	-				-1.9
2,243,757	-				-0.8
2,243,757	-				-0.8
2,243,817	+				-0.9
2,244,069	+		Rv1999c	0.19	+0.2
2,244,213	-		Rv1999c	0.30	-0.4
2,244,426	+		Rv1999c	0.46	+0.2
2,244,426	+		Rv1999c	0.46	-0.6
2,244,427	-		Rv1999c	0.46	-0.7
2,244,715	-		Rv1999c	0.68	-1.8