Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0587 and Rv0588 are separated by 1 nucleotides Rv0588 and Rv0589 are separated by 5 nucleotides Rv0589 and Rv0590 overlap by 4 nucleotides Rv0590 and Rv0590A overlap by 52 nucleotides
Rv0587: Rv0587 - Conserved hypothetical integral membrane protein YrbE2A, at 685,129 to 685,926
Rv0587
Rv0588: Rv0588 - Conserved hypothetical integral membrane protein YrbE2B, at 685,928 to 686,815
Rv0588
Rv0589: Rv0589 - Mce-family protein Mce2A, at 686,821 to 688,035
Rv0589
Rv0590: Rv0590 - Mce-family protein Mce2B, at 688,032 to 688,859
Rv0590
Rv0590A: Rv0590A - Mce-family related protein, at 688,808 to 689,062
Rv0590A
Position (kb) 686
687
688
689 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 686.544 kb on - strand, within Rv0588 at 686.573 kb on + strand, within Rv0588 at 686.663 kb on + strand, within Rv0588 at 686.667 kb on - strand, within Rv0588 at 686.673 kb on - strand, within Rv0588 at 686.781 kb on - strand at 686.863 kb on + strand at 686.864 kb on - strand at 686.988 kb on + strand, within Rv0589 at 687.634 kb on + strand, within Rv0589 at 687.688 kb on + strand, within Rv0589 at 687.991 kb on + strand at 687.991 kb on + strand at 688.235 kb on - strand, within Rv0590 at 688.235 kb on - strand, within Rv0590 at 688.937 kb on + strand, within Rv0590A at 688.938 kb on - strand, within Rv0590A at 689.011 kb on - strand, within Rv0590A
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5 remove 686,544 - Rv0588 0.69 -0.5 686,573 + Rv0588 0.73 +0.1 686,663 + Rv0588 0.83 -0.6 686,667 - Rv0588 0.83 +0.6 686,673 - Rv0588 0.84 +0.4 686,781 - +1.1 686,863 + -0.8 686,864 - +3.5 686,988 + Rv0589 0.14 -0.3 687,634 + Rv0589 0.67 +0.2 687,688 + Rv0589 0.71 +0.6 687,991 + -2.6 687,991 + +0.7 688,235 - Rv0590 0.25 -0.4 688,235 - Rv0590 0.25 -0.4 688,937 + Rv0590A 0.51 +0.1 688,938 - Rv0590A 0.51 +0.6 689,011 - Rv0590A 0.80 -1.2
Or see this region's nucleotide sequence