Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv0406c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
488,903	+		Rv0405	0.75	+2.8
488,903	+		Rv0405	0.75	-1.8
488,903	+		Rv0405	0.75	-0.6
488,903	+		Rv0405	0.75	-0.7
488,904	-		Rv0405	0.75	+0.2
488,908	-		Rv0405	0.75	+0.4
488,915	+		Rv0405	0.76	-0.5
488,916	-		Rv0405	0.76	-1.5
488,933	+		Rv0405	0.76	-0.3
488,934	-		Rv0405	0.76	+0.8
488,989	+		Rv0405	0.77	+0.3
489,005	+		Rv0405	0.78	-2.3
489,532	-				-0.0
489,535	+				+2.2
489,535	+				-0.8
489,536	-				-0.2
489,680	-				+0.4
489,937	+				-0.3
490,064	+		Rv0406c	0.22	-0.1
490,064	+		Rv0406c	0.22	+0.5
490,065	-		Rv0406c	0.22	-1.8
490,143	+		Rv0406c	0.31	-0.3
490,144	-		Rv0406c	0.31	+0.8
490,144	-		Rv0406c	0.31	-0.3
490,282	+		Rv0406c	0.48	-0.4
490,370	+		Rv0406c	0.59	-0.7
490,390	-		Rv0406c	0.61	+1.3
490,488	+		Rv0406c	0.73	-0.1
490,488	+		Rv0406c	0.73	-0.2
490,758	+				+1.1
490,759	-				-0.9
490,765	+				+0.0
490,766	-				-0.2
490,766	-				+0.2
490,771	+				+1.8
490,771	+				-0.0
490,772	-				-0.1
490,772	-				-0.3
490,772	-				+0.6
490,799	+				+1.2
490,804	+				-0.9
490,804	+				+1.3
490,805	-				-2.1
490,805	-				+4.1
491,196	-		Rv0407	0.41	-1.2
491,245	+		Rv0407	0.46	-1.6
491,300	-		Rv0407	0.51	-0.3
491,390	-		Rv0407	0.60	-1.4
491,486	-		Rv0407	0.70	-2.4
491,673	-		Rv0407	0.88	-1.5
491,680	+		Rv0407	0.89	+1.0
491,681	-		Rv0407	0.89	-2.2
491,681	-		Rv0407	0.89	-1.8