Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rv0228 and Rv0229c are separated by 27 nucleotides Rv0229c and Rv0230c overlap by 4 nucleotides Rv0230c and Rv0231 are separated by 94 nucleotides
Rv0228: Rv0228 - Probable integral membrane acyltransferase, at 273,055 to 274,278
Rv0228
Rv0229c: Rv0229c - Possible conserved membrane protein with PIN domain, at 274,306 to 274,986
Rv0229c
Rv0230c: Rv0230c - Probable phosphotriesterase Php (parathion hydrolase) (PTE) (aryldialkylphosphatase) (paraoxonase) (a-esterase) (aryltriphosphatase) (paraoxon hydrolase), at 274,983 to 275,963
Rv0230c
Rv0231: Rv0231 - Probable acyl-CoA dehydrogenase FadE4, at 276,058 to 277,764
Rv0231
Position (kb) 274
275
276 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 274.307 kb on + strand at 274.390 kb on + strand, within Rv0229c at 274.391 kb on - strand, within Rv0229c at 274.461 kb on + strand, within Rv0229c at 274.474 kb on + strand, within Rv0229c at 274.607 kb on - strand, within Rv0229c at 274.607 kb on - strand, within Rv0229c at 274.706 kb on + strand, within Rv0229c at 274.707 kb on - strand, within Rv0229c at 274.707 kb on - strand, within Rv0229c at 274.854 kb on - strand, within Rv0229c at 274.854 kb on - strand, within Rv0229c at 274.919 kb on - strand at 274.939 kb on + strand at 275.108 kb on - strand, within Rv0230c at 275.162 kb on - strand, within Rv0230c at 275.182 kb on - strand, within Rv0230c at 275.287 kb on + strand, within Rv0230c at 275.287 kb on + strand, within Rv0230c at 275.288 kb on - strand, within Rv0230c at 275.317 kb on + strand, within Rv0230c at 275.318 kb on - strand, within Rv0230c at 275.638 kb on + strand, within Rv0230c at 275.638 kb on + strand, within Rv0230c at 275.639 kb on - strand, within Rv0230c at 275.647 kb on + strand, within Rv0230c at 275.665 kb on + strand, within Rv0230c at 275.666 kb on - strand, within Rv0230c at 275.666 kb on - strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.671 kb on + strand, within Rv0230c at 275.737 kb on + strand, within Rv0230c at 275.738 kb on - strand, within Rv0230c at 275.738 kb on - strand, within Rv0230c at 275.948 kb on + strand at 275.948 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.952 kb on + strand at 275.953 kb on - strand at 275.975 kb on + strand at 275.975 kb on + strand at 275.976 kb on - strand at 275.976 kb on - strand at 276.012 kb on + strand at 276.092 kb on - strand at 276.259 kb on + strand, within Rv0231 at 276.290 kb on - strand, within Rv0231 at 276.326 kb on - strand, within Rv0231 at 276.326 kb on - strand, within Rv0231 at 276.337 kb on + strand, within Rv0231 at 276.337 kb on + strand, within Rv0231 at 276.337 kb on + strand, within Rv0231 at 276.337 kb on + strand, within Rv0231 at 276.338 kb on - strand, within Rv0231 at 276.338 kb on - strand, within Rv0231 at 276.338 kb on - strand, within Rv0231 at 276.343 kb on + strand, within Rv0231 at 276.547 kb on + strand, within Rv0231 at 276.547 kb on + strand, within Rv0231 at 276.548 kb on - strand, within Rv0231 at 276.548 kb on - strand, within Rv0231 at 276.548 kb on - strand, within Rv0231 at 276.550 kb on + strand, within Rv0231 at 276.550 kb on + strand, within Rv0231 at 276.551 kb on - strand, within Rv0231 at 276.551 kb on - strand, within Rv0231 at 276.551 kb on - strand, within Rv0231 at 276.551 kb on - strand, within Rv0231 at 276.625 kb on + strand, within Rv0231 at 276.625 kb on + strand, within Rv0231 at 276.626 kb on - strand, within Rv0231 at 276.626 kb on - strand, within Rv0231 at 276.662 kb on - strand, within Rv0231 at 276.662 kb on - strand, within Rv0231 at 276.697 kb on + strand, within Rv0231 at 276.697 kb on + strand, within Rv0231 at 276.698 kb on - strand, within Rv0231 at 276.698 kb on - strand, within Rv0231 at 276.709 kb on + strand, within Rv0231 at 276.710 kb on - strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.805 kb on + strand, within Rv0231 at 276.806 kb on - strand, within Rv0231 at 276.806 kb on - strand, within Rv0231 at 276.806 kb on - strand, within Rv0231 at 276.850 kb on + strand, within Rv0231 at 276.851 kb on - strand, within Rv0231 at 276.887 kb on - strand, within Rv0231 at 276.940 kb on + strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.941 kb on - strand, within Rv0231 at 276.941 kb on - strand, within Rv0231
Per-strain Table
Position Strand Gene LocusTag Fraction 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5 remove 274,307 + +0.2 274,390 + Rv0229c 0.12 -0.2 274,391 - Rv0229c 0.12 -0.3 274,461 + Rv0229c 0.23 +1.9 274,474 + Rv0229c 0.25 +0.7 274,607 - Rv0229c 0.44 +0.8 274,607 - Rv0229c 0.44 +0.8 274,706 + Rv0229c 0.59 -0.1 274,707 - Rv0229c 0.59 -0.5 274,707 - Rv0229c 0.59 +1.8 274,854 - Rv0229c 0.80 -1.0 274,854 - Rv0229c 0.80 -1.7 274,919 - -2.5 274,939 + -1.8 275,108 - Rv0230c 0.13 -0.4 275,162 - Rv0230c 0.18 +1.3 275,182 - Rv0230c 0.20 -0.4 275,287 + Rv0230c 0.31 +0.8 275,287 + Rv0230c 0.31 -0.7 275,288 - Rv0230c 0.31 +1.9 275,317 + Rv0230c 0.34 +0.5 275,318 - Rv0230c 0.34 -0.8 275,638 + Rv0230c 0.67 -3.3 275,638 + Rv0230c 0.67 -0.5 275,639 - Rv0230c 0.67 +0.9 275,647 + Rv0230c 0.68 +0.3 275,665 + Rv0230c 0.70 -0.1 275,666 - Rv0230c 0.70 +0.3 275,666 - Rv0230c 0.70 -2.3 275,671 + Rv0230c 0.70 -0.2 275,671 + Rv0230c 0.70 +0.3 275,671 + Rv0230c 0.70 -0.2 275,737 + Rv0230c 0.77 +0.8 275,738 - Rv0230c 0.77 +0.4 275,738 - Rv0230c 0.77 -1.7 275,948 + +1.3 275,948 + -1.2 275,952 + +0.4 275,952 + -0.7 275,952 + +1.4 275,952 + -0.8 275,953 - +0.5 275,975 + +0.5 275,975 + -0.4 275,976 - +1.2 275,976 - +1.3 276,012 + -0.3 276,092 - -0.3 276,259 + Rv0231 0.12 -1.3 276,290 - Rv0231 0.14 -0.9 276,326 - Rv0231 0.16 -0.2 276,326 - Rv0231 0.16 +2.3 276,337 + Rv0231 0.16 +0.1 276,337 + Rv0231 0.16 +0.3 276,337 + Rv0231 0.16 -0.6 276,337 + Rv0231 0.16 -1.4 276,338 - Rv0231 0.16 -0.4 276,338 - Rv0231 0.16 -0.8 276,338 - Rv0231 0.16 -1.8 276,343 + Rv0231 0.17 +0.5 276,547 + Rv0231 0.29 +0.1 276,547 + Rv0231 0.29 +1.0 276,548 - Rv0231 0.29 +0.0 276,548 - Rv0231 0.29 +0.4 276,548 - Rv0231 0.29 +0.3 276,550 + Rv0231 0.29 -0.9 276,550 + Rv0231 0.29 +0.9 276,551 - Rv0231 0.29 +0.6 276,551 - Rv0231 0.29 +0.1 276,551 - Rv0231 0.29 -2.1 276,551 - Rv0231 0.29 -0.8 276,625 + Rv0231 0.33 -0.2 276,625 + Rv0231 0.33 -1.1 276,626 - Rv0231 0.33 -0.8 276,626 - Rv0231 0.33 -0.0 276,662 - Rv0231 0.35 -0.3 276,662 - Rv0231 0.35 -0.6 276,697 + Rv0231 0.37 +0.6 276,697 + Rv0231 0.37 -0.6 276,698 - Rv0231 0.37 +0.2 276,698 - Rv0231 0.37 -0.1 276,709 + Rv0231 0.38 -1.2 276,710 - Rv0231 0.38 -1.6 276,805 + Rv0231 0.44 -2.9 276,805 + Rv0231 0.44 -0.0 276,805 + Rv0231 0.44 -0.3 276,805 + Rv0231 0.44 -0.6 276,805 + Rv0231 0.44 +3.1 276,806 - Rv0231 0.44 -2.2 276,806 - Rv0231 0.44 -0.3 276,806 - Rv0231 0.44 -0.8 276,850 + Rv0231 0.46 -0.5 276,851 - Rv0231 0.46 -0.3 276,887 - Rv0231 0.49 -0.9 276,940 + Rv0231 0.52 +1.8 276,941 - Rv0231 0.52 +0.2 276,941 - Rv0231 0.52 -0.1 276,941 - Rv0231 0.52 -0.5
Or see this region's nucleotide sequence