Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3784

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
4,230,098	+				-0.6
4,230,098	+				-0.3
4,230,099	-				+0.6
4,230,117	+				+0.3
4,230,118	-				-0.3
4,230,216	-				-1.9
4,230,216	-				+0.9
4,230,263	+				+0.7
4,230,263	+				-1.1
4,230,473	+		Rv3784	0.22	-0.5
4,230,474	-		Rv3784	0.22	-0.5
4,230,557	-		Rv3784	0.31	+0.3
4,230,557	-		Rv3784	0.31	-1.0
4,230,600	-		Rv3784	0.35	+1.0
4,230,600	-		Rv3784	0.35	-1.1
4,230,600	-		Rv3784	0.35	+0.0
4,230,601	+		Rv3784	0.35	-2.1
4,230,601	+		Rv3784	0.35	+0.3
4,230,601	+		Rv3784	0.35	-0.9
4,230,601	+		Rv3784	0.35	+2.8
4,230,601	+		Rv3784	0.35	-1.1
4,230,602	-		Rv3784	0.35	+0.2
4,230,602	-		Rv3784	0.35	-0.5
4,230,602	-		Rv3784	0.35	+0.5
4,230,605	+		Rv3784	0.36	-0.2
4,230,694	+		Rv3784	0.45	-0.6
4,230,730	+		Rv3784	0.48	-0.2
4,230,731	-		Rv3784	0.48	-0.9
4,230,748	+		Rv3784	0.50	-0.2
4,230,749	-		Rv3784	0.50	-0.2
4,230,885	+		Rv3784	0.64	-0.2
4,230,902	-		Rv3784	0.66	-0.7
4,230,907	+		Rv3784	0.66	-0.4
4,230,908	-		Rv3784	0.66	-0.1
4,230,908	-		Rv3784	0.66	-0.3
4,230,908	-		Rv3784	0.66	+1.8
4,230,908	-		Rv3784	0.66	+1.1
4,230,941	+		Rv3784	0.70	-0.9
4,230,944	+		Rv3784	0.70	+0.8
4,230,945	-		Rv3784	0.70	-0.3
4,231,021	+		Rv3784	0.78	-1.6
4,231,021	+		Rv3784	0.78	-1.0
4,231,021	+		Rv3784	0.78	-0.7
4,231,022	-		Rv3784	0.78	-1.1
4,231,022	-		Rv3784	0.78	-1.7
4,231,163	-				-0.8
4,231,164	+				+0.6
4,231,165	-				+0.1
4,231,165	-				-2.3
4,231,198	+				-1.9
4,231,234	+				+0.5
4,231,238	-				-0.4
4,231,307	+				-1.0
4,231,307	+				-0.1
4,231,307	+				+0.3
4,231,308	-				+0.7
4,231,330	+				-3.0
4,231,527	+		Rv3785	0.19	-0.7
4,231,724	-		Rv3785	0.38	-0.3
4,231,724	-		Rv3785	0.38	+1.2
4,231,898	-		Rv3785	0.54	-0.0
4,231,900	+		Rv3785	0.54	-0.8
4,231,901	-		Rv3785	0.54	-1.0
4,231,901	-		Rv3785	0.54	+0.2
4,231,953	+		Rv3785	0.59	-0.6
4,231,953	+		Rv3785	0.59	-1.2
4,232,027	-		Rv3785	0.66	-0.6
4,232,027	-		Rv3785	0.66	+0.6
4,232,027	-		Rv3785	0.66	+1.8
4,232,027	-		Rv3785	0.66	-0.3
4,232,126	+		Rv3785	0.75	-0.9
4,232,127	-		Rv3785	0.75	+0.1
4,232,127	-		Rv3785	0.75	+0.9
4,232,127	-		Rv3785	0.75	+0.5
4,232,127	-		Rv3785	0.75	-0.3
4,232,127	-		Rv3785	0.75	-0.6
4,232,222	-		Rv3785	0.84	+0.1