Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3405c

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
3,823,779	+				+0.5
3,823,779	+				-0.2
3,823,779	+				+1.9
3,823,779	+				-0.5
3,823,780	-				+0.1
3,823,821	+				-1.0
3,823,821	+				+0.1
3,823,821	+				+0.0
3,823,821	+				-0.1
3,823,821	+				+0.1
3,823,822	-				+0.6
3,823,822	-				-0.2
3,823,822	-				-0.4
3,823,836	+				-2.6
3,823,836	+				-0.8
3,823,837	-				-0.7
3,823,837	-				+1.7
3,823,837	-				-0.6
3,823,859	-				+1.3
3,824,095	+		Rv3404c	0.30	+0.4
3,824,103	+		Rv3404c	0.32	-1.2
3,824,103	+		Rv3404c	0.32	-0.2
3,824,103	+		Rv3404c	0.32	+0.1
3,824,103	+		Rv3404c	0.32	+0.1
3,824,103	+		Rv3404c	0.32	-0.4
3,824,104	-		Rv3404c	0.32	-0.4
3,824,104	-		Rv3404c	0.32	+0.3
3,824,104	-		Rv3404c	0.32	+0.7
3,824,104	-		Rv3404c	0.32	-0.1
3,824,104	-		Rv3404c	0.32	-1.5
3,824,172	+		Rv3404c	0.41	+1.1
3,824,326	-		Rv3404c	0.63	-0.3
3,824,326	-		Rv3404c	0.63	-0.1
3,824,395	+		Rv3404c	0.73	+0.4
3,824,396	-		Rv3404c	0.73	+0.6
3,824,396	-		Rv3404c	0.73	-0.1
3,824,421	+		Rv3404c	0.77	-0.1
3,824,499	+		Rv3404c	0.88	-1.1
3,824,499	+		Rv3404c	0.88	-0.2
3,824,499	+		Rv3404c	0.88	+0.0
3,824,510	-		Rv3404c	0.89	-3.7
3,824,576	+				+0.7
3,824,577	-				+0.7
3,824,645	+				+2.1
3,824,664	-				+0.3
3,824,750	+				-0.6
3,824,750	+				-0.6
3,824,750	+				+0.7
3,824,750	+				-0.8
3,824,751	-				-0.3
3,824,751	-				+1.7
3,824,751	-				-0.8
3,824,874	+		Rv3405c	0.30	-2.2
3,825,213	-				+0.8
3,825,213	-				-1.0
3,825,344	+				-0.6
3,825,345	-				+0.3
3,825,446	-		Rv3406	0.13	-0.8
3,825,648	+		Rv3406	0.36	-0.3
3,825,648	+		Rv3406	0.36	+0.2
3,825,648	+		Rv3406	0.36	-0.5
3,825,649	-		Rv3406	0.36	+0.0
3,825,729	+		Rv3406	0.45	-0.6
3,825,801	+		Rv3406	0.53	-0.4
3,825,801	+		Rv3406	0.53	+0.6
3,825,801	+		Rv3406	0.53	+1.2
3,825,802	-		Rv3406	0.53	+0.7
3,825,802	-		Rv3406	0.53	-1.0
3,825,802	-		Rv3406	0.53	-0.6
3,825,802	-		Rv3406	0.53	-1.0
3,825,895	+		Rv3406	0.64	-0.4
3,825,925	+		Rv3406	0.67	-0.9
3,825,925	+		Rv3406	0.67	+0.5
3,825,926	-		Rv3406	0.67	-2.7
3,826,054	+		Rv3406	0.82	+0.7
3,826,054	+		Rv3406	0.82	+1.2
3,826,102	-		Rv3406	0.87	+0.2
3,826,175	+				-0.1
3,826,242	-				-1.0