Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2342

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
2,619,348	+				+0.1
2,619,349	-				+0.5
2,619,349	-				+1.7
2,619,349	-				+0.6
2,619,349	-				-1.6
2,619,349	-				-0.3
2,619,524	-				-0.9
2,619,529	-				+0.6
2,619,529	-				-0.6
2,619,529	-				-0.3
2,619,529	-				+0.5
2,619,529	-				+0.5
2,619,550	+				+0.4
2,619,551	-				-0.4
2,619,604	+				-0.3
2,619,604	+				-0.8
2,619,605	-				+0.4
2,619,605	-				+0.7
2,619,605	-				-0.4
2,619,843	+		Rv2341	0.59	-0.4
2,619,844	-		Rv2341	0.59	-0.3
2,619,844	-		Rv2341	0.59	-1.1
2,619,844	-		Rv2341	0.59	+0.1
2,619,844	-		Rv2341	0.59	-0.8
2,619,957	+		Rv2341	0.86	-1.1
2,619,957	+		Rv2341	0.86	-0.4
2,619,958	-		Rv2341	0.86	+1.1
2,619,958	-		Rv2341	0.86	-0.0
2,619,958	-		Rv2341	0.86	-0.2
2,619,958	-		Rv2341	0.86	+0.7
2,620,052	-				+0.1
2,620,052	-				-0.3
2,620,066	-				+0.1
2,620,066	-				-0.4
2,620,114	+				+0.1
2,620,115	-				+0.0
2,620,115	-				-1.4
2,620,115	-				+0.3
2,620,177	+				+0.9
2,620,178	-				-0.2
2,620,227	+				-0.2
2,620,227	+				+2.5
2,620,228	-				+0.2
2,620,228	-				-0.1
2,620,255	+				-1.3
2,620,281	+				-0.4
2,620,305	+		Rv2342	0.13	-0.0
2,620,306	-		Rv2342	0.13	-0.4
2,620,306	-		Rv2342	0.13	-0.4
2,620,306	-		Rv2342	0.13	-0.9
2,620,338	+		Rv2342	0.26	-1.6
2,620,359	+		Rv2342	0.34	-0.9