Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1771

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
2,004,368	+		Rv1770	0.38	-1.0
2,004,429	+		Rv1770	0.43	-1.4
2,004,430	-		Rv1770	0.43	-0.2
2,004,430	-		Rv1770	0.43	+1.1
2,004,430	-		Rv1770	0.43	-0.3
2,004,440	+		Rv1770	0.44	+0.3
2,004,440	+		Rv1770	0.44	+0.3
2,004,441	-		Rv1770	0.44	-0.3
2,004,769	+		Rv1770	0.69	-0.9
2,004,769	+		Rv1770	0.69	+0.1
2,004,770	-		Rv1770	0.69	+0.9
2,004,817	+		Rv1770	0.73	-0.6
2,004,817	+		Rv1770	0.73	+0.4
2,004,817	+		Rv1770	0.73	-0.5
2,004,817	+		Rv1770	0.73	+0.3
2,004,817	+		Rv1770	0.73	-1.2
2,004,817	+		Rv1770	0.73	-0.6
2,004,817	+		Rv1770	0.73	+0.2
2,004,818	-		Rv1770	0.73	-1.9
2,004,818	-		Rv1770	0.73	+0.2
2,004,818	-		Rv1770	0.73	+0.2
2,004,818	-		Rv1770	0.73	+0.0
2,004,818	-		Rv1770	0.73	-0.4
2,004,818	-		Rv1770	0.73	-0.2
2,004,818	-		Rv1770	0.73	+0.7
2,004,818	-		Rv1770	0.73	-0.5
2,004,895	+		Rv1770	0.79	-1.4
2,004,895	+		Rv1770	0.79	+0.1
2,004,895	+		Rv1770	0.79	+0.4
2,004,896	-		Rv1770	0.79	+1.4
2,004,896	-		Rv1770	0.79	-0.5
2,004,896	-		Rv1770	0.79	-1.5
2,004,901	+		Rv1770	0.79	-0.5
2,005,066	+				-0.2
2,005,066	+				+1.7
2,005,066	+				-0.1
2,005,083	+				+0.4
2,005,084	-				-2.1
2,005,102	+				+0.5
2,005,178	+				+0.1
2,005,219	+				-0.6
2,005,423	+		Rv1771	0.20	+0.7
2,005,423	+		Rv1771	0.20	-0.4
2,005,424	-		Rv1771	0.20	-0.4
2,005,424	-		Rv1771	0.20	-1.6
2,005,627	-		Rv1771	0.36	+0.5
2,005,696	+		Rv1771	0.42	-0.3
2,005,696	+		Rv1771	0.42	-0.8
2,006,014	-		Rv1771	0.66	-2.2
2,006,014	-		Rv1771	0.66	-1.1
2,006,197	-		Rv1771	0.80	-0.5
2,006,215	-		Rv1771	0.82	-2.2
2,006,233	-		Rv1771	0.83	-1.8
2,006,256	+		Rv1771	0.85	-0.1
2,006,257	-		Rv1771	0.85	+0.6
2,006,313	-		Rv1771	0.90	-0.4
2,006,523	+				-0.4
2,006,531	-				-0.9
2,006,946	-				+0.7
2,007,425	+		Rv1773c	0.54	-0.6