Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv1388

Experiment: 7H9 with Hydrogen peroxide 2.5 mM; pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	7H9 with Hydrogen peroxide 2.5 mM; pH 5.5
1,562,727	+		Rv1387	0.59	-0.3
1,562,727	+		Rv1387	0.59	-0.0
1,562,727	+		Rv1387	0.59	+0.3
1,562,727	+		Rv1387	0.59	-0.4
1,562,727	+		Rv1387	0.59	-1.2
1,562,728	-		Rv1387	0.59	+1.7
1,562,728	-		Rv1387	0.59	+0.1
1,562,728	-		Rv1387	0.59	+0.8
1,562,728	-		Rv1387	0.59	-0.4
1,562,728	-		Rv1387	0.59	-0.3
1,562,746	-		Rv1387	0.60	-0.5
1,562,825	-		Rv1387	0.65	+1.1
1,562,966	+		Rv1387	0.74	-0.8
1,562,967	-		Rv1387	0.74	+2.0
1,562,967	-		Rv1387	0.74	-0.1
1,562,994	+		Rv1387	0.76	-0.7
1,562,994	+		Rv1387	0.76	-2.2
1,562,995	-		Rv1387	0.76	-0.7
1,563,236	-				-1.1
1,563,438	+				+0.1
1,563,438	+				+0.3
1,563,439	-				+1.7
1,563,487	+				+1.7
1,563,488	-				+1.2
1,563,488	-				+0.3
1,565,041	+				-0.0
1,565,048	+				+0.7
1,565,048	+				+0.3
1,565,048	+				-0.9
1,565,052	+				-0.5
1,565,052	+				-2.0