Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3829c

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
4,302,430	-		Rv3827c	0.71	+0.4
4,302,458	+		Rv3827c	0.73	+1.0
4,302,491	+		Rv3827c	0.76	-0.5
4,302,492	-		Rv3827c	0.76	-1.2
4,302,576	+		Rv3827c	0.83	-0.7
4,302,577	-		Rv3827c	0.83	-0.3
4,302,577	-		Rv3827c	0.83	+1.2
4,302,669	-				-0.1
4,302,859	+		Rv3828c	0.12	+0.5
4,302,860	-		Rv3828c	0.12	-1.7
4,302,979	+		Rv3828c	0.32	-1.1
4,302,980	-		Rv3828c	0.32	-0.9
4,302,980	-		Rv3828c	0.32	+0.9
4,303,065	-		Rv3828c	0.46	+0.1
4,303,205	-		Rv3828c	0.68	-0.7
4,303,379	+				+0.2
4,303,380	-				-0.1
4,303,380	-				-0.3
4,303,380	-				-0.7
4,303,400	-				+1.0
4,303,400	-				+1.7
4,303,434	-				+0.3
4,303,464	-				-0.3
4,303,465	+				-1.2
4,303,466	-				-0.4
4,303,520	-				-0.2
4,303,612	+		Rv3829c	0.13	-0.9
4,303,634	-		Rv3829c	0.15	-0.7
4,303,706	+		Rv3829c	0.19	-1.3
4,303,707	-		Rv3829c	0.19	-0.6
4,303,707	-		Rv3829c	0.19	-0.6
4,303,766	-		Rv3829c	0.23	-0.5
4,303,988	-		Rv3829c	0.37	-0.4
4,304,065	+		Rv3829c	0.41	-1.7
4,304,134	-		Rv3829c	0.46	-0.3
4,304,557	+		Rv3829c	0.72	-1.2
4,304,690	+		Rv3829c	0.80	-0.0
4,304,690	+		Rv3829c	0.80	+0.1
4,304,906	+				-1.3
4,304,907	-				-0.8
4,304,907	-				-0.4
4,304,989	-				+0.0
4,305,008	+				-0.6
4,305,323	-		Rv3830c	0.42	+0.3
4,305,376	-		Rv3830c	0.51	-0.2
4,305,537	+		Rv3830c	0.76	-0.8
4,305,880	+		Rv3831	0.25	+0.1
4,305,881	-		Rv3831	0.26	+0.8
4,305,883	+		Rv3831	0.26	+2.2
4,305,883	+		Rv3831	0.26	-0.7
4,305,883	+		Rv3831	0.26	-0.9
4,305,884	-		Rv3831	0.26	+1.7
4,305,884	-		Rv3831	0.26	-0.2
4,305,997	+		Rv3831	0.50	-0.3