Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3747

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
4,195,816	+				-0.1
4,195,855	+				-0.9
4,196,104	+				-0.4
4,196,104	+				-0.0
4,196,104	+				-0.1
4,196,104	+				-1.5
4,196,104	+				-1.9
4,196,105	-				-0.2
4,196,105	-				-1.7
4,196,105	-				-0.1
4,196,105	-				-1.1
4,196,105	-				+1.3
4,196,105	-				-1.5
4,196,112	+				+1.3
4,196,112	+				+0.1
4,196,112	+				-0.2
4,196,140	+				-0.4
4,196,140	+				+0.1
4,196,172	+				-0.4
4,196,173	-				-0.6
4,196,433	-		Rv3746c	0.78	+0.2
4,196,518	+				-0.2
4,196,518	+				-0.1
4,196,518	+				-0.4
4,196,628	+				+0.5
4,196,628	+				-1.0
4,196,629	-				+0.7
4,196,629	-				-0.2
4,196,646	-				-0.2
4,196,678	+				+1.7
4,196,678	+				-0.1
4,196,728	+				-0.5
4,196,729	-				-0.2
4,196,732	+				-0.8
4,196,891	+		Rv3747	0.43	-0.5
4,196,891	+		Rv3747	0.43	-0.9
4,196,891	+		Rv3747	0.43	-0.8
4,196,892	-		Rv3747	0.44	+1.7
4,197,097	+				+0.6
4,197,175	+				-0.1
4,197,176	-				+0.0
4,197,241	-				-0.5
4,197,510	+		Rv3748	0.76	-0.7
4,197,600	+				-0.4
4,197,600	+				-0.4
4,197,601	-				-0.5
4,197,601	-				+0.4
4,197,601	-				-0.2
4,197,630	-				-0.3
4,197,630	-				-0.6
4,197,630	-				-0.1
4,197,734	-		Rv3749c	0.21	+0.3
4,197,734	-		Rv3749c	0.21	-0.3
4,197,734	-		Rv3749c	0.21	-0.4
4,197,767	+		Rv3749c	0.27	+0.5
4,197,798	+		Rv3749c	0.33	-0.3
4,197,813	-		Rv3749c	0.36	+1.7
4,197,866	+		Rv3749c	0.47	-0.4
4,197,867	-		Rv3749c	0.47	-1.7
4,197,867	-		Rv3749c	0.47	-2.1
4,197,875	-		Rv3749c	0.48	+1.7
4,197,913	+		Rv3749c	0.56	+0.3
4,197,913	+		Rv3749c	0.56	-0.6
4,197,947	-		Rv3749c	0.63	+0.1
4,197,965	+		Rv3749c	0.66	-0.2
4,197,965	+		Rv3749c	0.66	+0.2
4,197,965	+		Rv3749c	0.66	-0.4
4,197,965	+		Rv3749c	0.66	-0.2
4,197,965	+		Rv3749c	0.66	-0.1
4,197,966	-		Rv3749c	0.66	-0.5
4,197,966	-		Rv3749c	0.66	-0.7
4,197,966	-		Rv3749c	0.66	+0.3
4,198,104	+				-0.8
4,198,104	+				+0.1
4,198,105	-				-0.2