Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3726

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
4,170,502	-		Rv3725	0.31	-0.5
4,170,727	+		Rv3725	0.55	+0.7
4,170,727	+		Rv3725	0.55	+0.1
4,170,728	-		Rv3725	0.55	-0.6
4,170,728	-		Rv3725	0.55	+0.3
4,170,911	-		Rv3725	0.75	+0.7
4,171,050	+		Rv3725	0.90	+0.5
4,171,064	+				-0.2
4,171,085	+				+0.1
4,171,085	+				+0.1
4,171,086	-				+0.7
4,171,086	-				+0.7
4,171,086	-				-0.2
4,171,092	+				-0.1
4,171,092	+				-0.5
4,171,092	+				+0.7
4,171,093	-				-0.5
4,171,093	-				-0.5
4,171,093	-				+1.4
4,171,093	-				-0.1
4,171,093	-				-0.7
4,171,095	+				+0.2
4,171,095	+				+0.1
4,171,095	+				-2.4
4,171,096	-				+0.6
4,171,096	-				-0.2
4,171,096	-				+1.0
4,171,141	+				+0.6
4,171,141	+				-0.1
4,171,141	+				+1.7
4,171,142	-				+0.2
4,171,142	-				-0.4
4,171,212	+				+0.5
4,171,213	-				-0.2
4,171,350	+				+0.7
4,171,350	+				-0.2
4,171,350	+				-1.4
4,171,351	-				-0.7
4,171,351	-				+0.7
4,171,351	-				-0.9
4,171,415	+				-0.5
4,171,661	+		Rv3726	0.20	-0.8
4,171,987	-		Rv3726	0.47	+0.1
4,172,084	+		Rv3726	0.56	-0.1
4,172,686	-				+0.2
4,172,698	-				+0.1
4,172,738	+				+0.3
4,172,742	+				-0.4
4,172,742	+				+1.1
4,172,742	+				-1.4
4,172,743	-				-0.7
4,172,743	-				+0.1
4,172,743	-				+0.5
4,172,743	-				+0.1
4,172,743	-				+1.4
4,172,743	-				-0.9
4,172,743	-				-0.0
4,172,769	+				+0.2
4,172,769	+				-0.3
4,172,793	+				-1.3
4,172,794	-				+0.1
4,172,838	-				+0.8
4,172,838	-				-0.4
4,172,947	+				-0.6
4,173,152	+		Rv3727	0.11	+0.5
4,173,152	+		Rv3727	0.11	+0.3
4,173,153	-		Rv3727	0.11	-0.2
4,173,185	+		Rv3727	0.13	-1.2
4,173,185	+		Rv3727	0.13	-1.2
4,173,186	-		Rv3727	0.13	-0.0
4,173,214	+		Rv3727	0.14	+1.3
4,173,249	-		Rv3727	0.16	-0.5
4,173,325	+		Rv3727	0.20	-0.1
4,173,326	-		Rv3727	0.21	+0.2
4,173,435	+		Rv3727	0.27	-0.7
4,173,435	+		Rv3727	0.27	+0.9
4,173,441	+		Rv3727	0.27	-0.0
4,173,451	+		Rv3727	0.27	-0.7
4,173,451	+		Rv3727	0.27	-0.2
4,173,451	+		Rv3727	0.27	+0.2
4,173,451	+		Rv3727	0.27	-0.2
4,173,451	+		Rv3727	0.27	+0.3
4,173,452	-		Rv3727	0.27	+2.7
4,173,452	-		Rv3727	0.27	+0.6
4,173,507	+		Rv3727	0.31	-2.4
4,173,579	+		Rv3727	0.34	-0.7
4,173,580	-		Rv3727	0.35	-0.6