Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv3046c

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
3,406,453	+		Rv3045	0.16	+0.2
3,406,454	-		Rv3045	0.16	-0.0
3,406,702	+		Rv3045	0.40	-1.2
3,406,775	-		Rv3045	0.47	+0.1
3,406,948	+		Rv3045	0.64	-0.3
3,406,951	+		Rv3045	0.64	-0.5
3,407,249	-				-0.6
3,407,249	-				-0.4
3,407,249	-				-1.3
3,407,263	+				-0.3
3,407,578	+		Rv3046c	0.70	-2.0
3,407,878	+				-0.8
3,407,879	-				-0.3
3,408,051	+		Rv3047c	0.10	-0.5
3,408,051	+		Rv3047c	0.10	-0.7
3,408,052	-		Rv3047c	0.11	+0.2
3,408,052	-		Rv3047c	0.11	-0.9
3,408,127	+		Rv3047c	0.37	-0.6
3,408,128	-		Rv3047c	0.37	-1.0
3,408,211	+		Rv3047c	0.66	-0.1
3,408,326	+				-0.3
3,408,326	+				-1.1
3,408,326	+				+0.8
3,408,329	+				-0.2
3,408,329	+				+0.6
3,408,330	-				-0.9
3,408,330	-				-1.5
3,408,333	+				-0.4
3,408,333	+				-0.0
3,408,334	-				-0.5
3,408,334	-				-0.8
3,408,334	-				-0.6
3,408,334	-				-0.0
3,408,334	-				-0.3
3,408,334	-				+0.7
3,408,337	+				-0.2
3,408,338	-				-0.7
3,408,405	+				-0.1
3,408,405	+				+0.5
3,408,405	+				-1.0
3,408,405	+				+1.1
3,408,406	-				-0.3