Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2893

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
3,201,501	+		Rv2892c	0.58	-0.6
3,201,561	-		Rv2892c	0.63	-0.7
3,201,561	-		Rv2892c	0.63	-0.4
3,201,561	-		Rv2892c	0.63	-1.7
3,201,561	-		Rv2892c	0.63	+0.5
3,201,566	+		Rv2892c	0.63	-0.2
3,201,566	+		Rv2892c	0.63	-0.5
3,201,566	+		Rv2892c	0.63	-0.4
3,201,566	+		Rv2892c	0.63	-0.2
3,201,566	+		Rv2892c	0.63	-0.2
3,201,567	-		Rv2892c	0.63	-0.3
3,201,567	-		Rv2892c	0.63	-0.3
3,201,567	-		Rv2892c	0.63	-1.4
3,201,567	-		Rv2892c	0.63	+1.6
3,201,567	-		Rv2892c	0.63	-0.3
3,201,567	-		Rv2892c	0.63	-0.4
3,201,567	-		Rv2892c	0.63	-0.6
3,201,567	-		Rv2892c	0.63	-0.8
3,201,567	-		Rv2892c	0.63	-0.4
3,201,603	-		Rv2892c	0.66	-0.0
3,201,806	+		Rv2892c	0.82	-0.1
3,201,806	+		Rv2892c	0.82	-1.1
3,201,807	-		Rv2892c	0.83	+1.1
3,201,807	-		Rv2892c	0.83	+0.1
3,201,855	-		Rv2892c	0.86	-0.1
3,201,974	+				-0.1
3,201,974	+				+1.3
3,201,974	+				-1.4
3,201,975	-				-0.6
3,202,087	+				+0.4
3,202,087	+				-0.5
3,202,088	-				-2.8
3,202,198	-				+0.2
3,202,244	+				-0.3
3,202,446	+				-0.6
3,202,759	+		Rv2893	0.35	+0.5
3,202,776	+		Rv2893	0.36	-0.4
3,202,776	+		Rv2893	0.36	-0.5
3,202,777	-		Rv2893	0.37	-1.7
3,203,090	+		Rv2893	0.69	-1.7
3,203,090	+		Rv2893	0.69	-0.9
3,203,091	-		Rv2893	0.69	-0.9
3,203,091	-		Rv2893	0.69	+2.6
3,203,091	-		Rv2893	0.69	-0.4
3,203,311	+				+0.6
3,203,312	-				-1.2
3,203,456	-				-0.2
3,204,259	+				+0.3
3,204,260	-				-1.3
3,204,382	+				-0.1
3,204,382	+				+1.6