Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2680

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
2,995,123	+				-0.2
2,995,123	+				+0.2
2,995,124	-				+1.7
2,995,622	+		Rv2679	0.61	-0.4
2,995,623	-		Rv2679	0.61	-1.0
2,995,623	-		Rv2679	0.61	-0.3
2,995,625	+		Rv2679	0.61	-1.1
2,995,797	-		Rv2679	0.82	-0.5
2,995,989	+				+0.4
2,996,277	-		Rv2680	0.27	-0.4
2,996,367	-		Rv2680	0.41	-2.9
2,996,402	-		Rv2680	0.47	-0.7
2,996,875	+		Rv2681	0.10	-0.4
2,996,987	-		Rv2681	0.19	+0.1
2,997,116	+		Rv2681	0.29	+0.5
2,997,133	+		Rv2681	0.30	-0.4
2,997,135	+		Rv2681	0.30	+0.1
2,997,136	-		Rv2681	0.30	-0.2
2,997,136	-		Rv2681	0.30	+2.0
2,997,206	-		Rv2681	0.35	+0.3
2,997,283	-		Rv2681	0.41	-0.5
2,997,576	-		Rv2681	0.64	-0.4
2,997,576	-		Rv2681	0.64	-0.9