Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2335

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
2,609,503	-		Rv2334	0.76	-0.2
2,609,727	-				+1.2
2,609,928	+		Rv2335	0.28	+0.3
2,609,929	-		Rv2335	0.29	-0.4
2,609,929	-		Rv2335	0.29	-1.3
2,609,932	+		Rv2335	0.29	-1.0
2,610,427	+				-0.5
2,610,486	+				-0.5
2,610,574	+				-0.2
2,610,574	+				-0.3
2,610,770	+				-0.0
2,610,771	-				+0.8
2,610,783	-				-0.0
2,611,010	-		Rv2336	0.18	+0.1
2,611,010	-		Rv2336	0.18	+1.6
2,611,010	-		Rv2336	0.18	-0.1
2,611,078	-		Rv2336	0.25	-0.3
2,611,078	-		Rv2336	0.25	-0.2
2,611,099	-		Rv2336	0.27	+1.6
2,611,196	-		Rv2336	0.37	+0.1
2,611,197	+		Rv2336	0.37	-0.2
2,611,198	-		Rv2336	0.37	-0.5