Strain Fitness in Mycobacterium tuberculosis H37Rv around Rv2265

Experiment: pH 5.5

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	pH 5.5
2,537,710	+		Rv2264c	0.64	-0.4
2,537,710	+		Rv2264c	0.64	+0.5
2,537,710	+		Rv2264c	0.64	+1.0
2,537,710	+		Rv2264c	0.64	-1.8
2,537,711	-		Rv2264c	0.64	-0.1
2,537,711	-		Rv2264c	0.64	-0.3
2,537,711	-		Rv2264c	0.64	-1.7
2,537,711	-		Rv2264c	0.64	-2.1
2,537,838	+		Rv2264c	0.71	-0.5
2,537,887	+		Rv2264c	0.74	-0.1
2,537,887	+		Rv2264c	0.74	-0.7
2,537,888	-		Rv2264c	0.74	-1.2
2,537,992	-		Rv2264c	0.80	-0.5
2,538,019	+		Rv2264c	0.81	-0.1
2,538,020	-		Rv2264c	0.81	+1.6
2,538,067	+		Rv2264c	0.84	+0.2
2,538,067	+		Rv2264c	0.84	-0.0
2,538,068	-		Rv2264c	0.84	-1.7
2,538,113	-		Rv2264c	0.87	+0.0
2,538,163	-		Rv2264c	0.89	+0.1
2,538,264	-				+1.0
2,538,297	+				+0.6
2,538,298	-				-1.0
2,538,325	-				-0.9
2,538,325	-				+0.2
2,538,350	+				-0.9
2,538,410	+				+0.5
2,538,410	+				-0.5
2,538,411	-				-0.3
2,538,411	-				-0.7
2,538,411	-				-0.6
2,538,414	+				-1.2
2,538,414	+				+0.1
2,538,414	+				-0.8
2,538,414	+				-0.7
2,538,415	-				-1.9
2,538,415	-				-1.0
2,538,415	-				-0.3
2,538,415	-				+0.4
2,538,538	+				-0.8
2,538,668	-				-0.2
2,538,691	+				-0.9
2,538,691	+				-0.3
2,538,691	+				-1.7
2,538,692	-				-2.1
2,538,692	-				+1.6
2,538,814	+				-0.5
2,538,814	+				+0.1
2,538,986	-		Rv2265	0.23	-0.2
2,539,234	+		Rv2265	0.43	-1.6
2,539,234	+		Rv2265	0.43	-1.0
2,539,565	-		Rv2265	0.70	+0.1
2,539,695	-		Rv2265	0.81	-0.7
2,539,760	-		Rv2265	0.86	-1.0
2,539,825	+				-0.8
2,539,826	-				+0.8
2,539,826	-				-0.9
2,540,053	+				+0.9
2,540,053	+				-0.5
2,540,326	+		Rv2266	0.17	-1.0
2,540,327	-		Rv2266	0.17	+0.2
2,540,341	+		Rv2266	0.18	-0.8
2,540,419	+		Rv2266	0.24	-1.6
2,540,568	+		Rv2266	0.36	-0.5
2,540,628	+		Rv2266	0.41	-0.4
2,540,629	-		Rv2266	0.41	-1.9